BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932635
Length=714
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25110.1 | Symbols: SDF2, ATSDL, AtSDF2 | stromal cell-deriv... 1208 0.0
> AT2G25110.1 | Symbols: SDF2, ATSDL, AtSDF2 | stromal cell-derived
factor 2-like protein precursor | chr2:10684135-10686085
FORWARD LENGTH=1197
Length=1197
Score = 1208 bits (654), Expect = 0.0
Identities = 694/714 (97%), Gaps = 0/714 (0%)
Strand=Plus/Plus
Query 1 TGGTTTATCGGTCTGCTCTTCGTGATGGCTTTAGGATTCTTCTGTCTCGCTATCTTCCTT 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 270 TGGTTTATCGGTCTGCTATTCGTGATGGCTTTAGGATTCTTCTGTCTCGCTATCTTCCTT 329
Query 61 TACCTAAGTCTCGATCCTGATTCCGGTTACACAACTGCCTCCGCCGCCGCTTCTGGTAAA 120
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 330 TACCTAAGTCTCGATCCTGATTCCGGTTACACGTCTGCCTCCGCCGCTGCTTCTGGTAAA 389
Query 121 GAAGGTGTCGAGATTACTTATGGAAGTGCGATTAAGCTGATGCACGAGAAAACTAAATTT 180
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 390 GAAGGTGTCGAGATTACTTATGGAAGTGCGATCAAGTTGATGCACGAGAAAACTAAATTT 449
Query 181 CGATTGCATTCTCACGATGTGCCGTATGGATCCGGTAGTGGTCAGCAATCAGTCACTGGT 240
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 450 CGATTACATTCTCACGATGTGCCGTATGGATCCGGCAGTGGTCAGCAATCAGTCACTGGT 509
Query 241 TTTCCAGGCGTCGTTGATTCCAACAGCTATTGGATTGTTAAACCTGTGCCTGGGACAACA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 TTTCCAGGCGTCGTTGATTCCAACAGCTATTGGATTGTTAAACCTGTGCCTGGGACAACA 569
Query 301 GAAAAGCAAGGTGATGCTGTCAAGAGTGGAGCAACCATTAGATTGCAGCATATGAAGACC 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 570 GAAAAGCAAGGTGATGCTGTCAAGAGTGGAGCAACCATTAGGTTGCAGCATATGAAGACC 629
Query 361 AGAAAATGGCTTCACAGTCACTTGCATGCATCTCCTATATCAGGGAACTTAGAGGTTAGC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 630 AGAAAATGGCTTCACAGTCACTTGCATGCATCTCCTATATCAGGGAACTTAGAGGTTAGC 689
Query 421 TGCTTCGGAGATGATACAAATTCCGATACCGGTGATCACTGGAAGCTTATAATCGAAGGA 480
||||| ||||||||||||||||||||||| || |||||||||||||||||||| ||||||
Sbjct 690 TGCTTTGGAGATGATACAAATTCCGATACTGGGGATCACTGGAAGCTTATAATTGAAGGA 749
Query 481 AGTGGGAAGACATGGAAACAGGACCAAAGAGTCCGTCTTCAACACATAGACACTAGTGGC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 750 AGTGGGAAGACATGGAAACAGGACCAAAGAGTCCGTCTTCAACACATAGACACTAGTGGC 809
Query 541 TACCTCCATAGCCATGACAAGAAGTACCAACGTATAGCTGGTGGTCAGCAAGAGGTGTGT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 TACCTCCATAGCCATGACAAGAAGTACCAACGTATAGCTGGTGGTCAGCAAGAGGTGTGT 869
Query 601 GGAATTCGGGAGAAGAAGGCGGATAATGTTTGGTTGGCAGCAGAAGGAGTCTACATTCCC 660
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 870 GGAATTCGGGAGAAGAAGGCGGATAACATTTGGTTGGCAGCAGAAGGAGTCTACCTTCCC 929
Query 661 CTTAATGAGAGCAGCAAGTAAGGTGAAGAGTGTGATAACTTCTCTGGAGGACTT 714
|||||||||||||||||||||||| ||||||| | ||||||||||||||||||
Sbjct 930 CTTAATGAGAGCAGCAAGTAAGGTTAAGAGTGAAAAAACTTCTCTGGAGGACTT 983
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34611327283
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5