BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932642

Length=196
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G32390.3 | Symbols: GLR3.5 | glutamate receptor  3.5 | chr2:...   244    2e-64


> AT2G32390.3 | Symbols: GLR3.5 | glutamate receptor  3.5 | chr2:13748441-13751933 
REVERSE LENGTH=2749
Length=2749

 Score =  244 bits (132),  Expect = 2e-64
 Identities = 154/165 (93%), Gaps = 0/165 (0%)
 Strand=Plus/Plus

Query  1    CACAGAACGACTACTTCCAGATGAATGCAATCGCGGATTTTGTATCCTATTTCCGATGGA  60
            ||||||| || ||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct  492  CACAGAATGATTACTTCCAGATGAATGCAATCACGGATTTTGTATCCTATTTTCGATGGA  551

Query  61   GAGAAGTTGTTGTGATCTTTGTGGATGATGAGTATGGTAGGAACGGGATATCTGTATTAG  120
            |||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||
Sbjct  552  GAGAAGTTGTTGCGATCTTTGTGGATGATGAGTATGGTAGGAATGGAATATCTGTATTAG  611

Query  121  GCGATGTTTTAGCAAAGAAACGTGCCAAGATCTCATACAAGGCTG  165
            | |||| |||||| |||||||||||||||||||| ||||||||||
Sbjct  612  GTGATGCTTTAGCCAAGAAACGTGCCAAGATCTCTTACAAGGCTG  656



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8702133723


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5