BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932651
Length=197
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25210.1 | Symbols: | Ribosomal protein L39 family protein ... 320 3e-87
AT4G31985.1 | Symbols: | Ribosomal protein L39 family protein ... 220 3e-57
AT3G02190.1 | Symbols: | Ribosomal protein L39 family protein ... 165 1e-40
AT5G42130.1 | Symbols: | Mitochondrial substrate carrier famil... 52.8 1e-06
> AT2G25210.1 | Symbols: | Ribosomal protein L39 family protein
| chr2:10739855-10740552 FORWARD LENGTH=402
Length=402
Score = 320 bits (173), Expect = 3e-87
Identities = 190/198 (96%), Gaps = 1/198 (1%)
Strand=Plus/Plus
Query 1 CAAGATCGCAAGGCTTGAAGATGCCGTCGCACAAGTCGTTCATGATTAAGAAGAAACTAG 60
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| | |
Sbjct 54 CAAGATCGCAAGACTTCAAGATGCCGTCGCACAAGTCGTTCATGATTAAGAAGAAATTGG 113
Query 61 CGAAGAAAATGAGGCAAAACAGGCCTATTCCTCACTGGATTCGTCTTCGTACCGACAACA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 114 GGAAGAAAATGAGGCAAAACAGGCCTATTCCTCACTGGATTCGTCTTCGTACCGACAACA 173
Query 121 CCATCAGGTACAATGCTAAGCGTAGGCATTGGCGCAGAACCAAGCTTGGATTCTAAGAGG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 CCATCAGGTACAATGCTAAGCGTAGGCATTGGCGCAGAACCAAGCTTGGATTCTAAGAGG 233
Query 181 TT-ACTTTTACCTATTGT 197
|| |||||| | ||||||
Sbjct 234 TTTACTTTTGCTTATTGT 251
> AT4G31985.1 | Symbols: | Ribosomal protein L39 family protein
| chr4:15469895-15470559 FORWARD LENGTH=385
Length=385
Score = 220 bits (119), Expect = 3e-57
Identities = 150/165 (91%), Gaps = 2/165 (1%)
Strand=Plus/Plus
Query 14 CTTGAAGATGCCGTCGCACAAGTCGTTCATGATTAAGAAGAAACTAGCG-AAGAAAATGA 72
||| ||||||||||||||||||||||| |||||||||||| || | | | ||||| ||||
Sbjct 30 CTTCAAGATGCCGTCGCACAAGTCGTTTATGATTAAGAAG-AAGTTGGGAAAGAAGATGA 88
Query 73 GGCAAAACAGGCCTATTCCTCACTGGATTCGTCTTCGTACCGACAACACCATCAGGTACA 132
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 89 GACAGAACAGGCCTATTCCTCACTGGATTCGTCTTCGTACCGACAACACCATCAGGTACA 148
Query 133 ATGCTAAGCGTAGGCATTGGCGCAGAACCAAGCTTGGATTCTAAG 177
|||| ||||| ||||| ||||| ||||||||||| ||||||||||
Sbjct 149 ATGCCAAGCGCAGGCACTGGCGTAGAACCAAGCTCGGATTCTAAG 193
> AT3G02190.1 | Symbols: | Ribosomal protein L39 family protein
| chr3:405816-406401 REVERSE LENGTH=404
Length=404
Score = 165 bits (89), Expect = 1e-40
Identities = 138/162 (85%), Gaps = 1/162 (1%)
Strand=Plus/Plus
Query 18 AAGATGCCGTCGCACAAGTCGTTCATGATTAAGAAGAAACTAGCGAAGAAAATGAGGCAA 77
||||||||||||||||||||||||||||| || ||||| |||| |||||| ||||| ||
Sbjct 57 AAGATGCCGTCGCACAAGTCGTTCATGATCAAAAAGAAGCTAGGGAAGAAGATGAGACAG 116
Query 78 AACAGGCCTATTCCTCACTGGATTCGTCTTCGTACCGACAACACCATCAGGTACAATGCT 137
||||| || || ||| | ||||| ||||| ||||| || |||| ||||||||||| |||
Sbjct 117 AACAGACCGATCCCTAATTGGATCCGTCTCCGTACTGATAACAAAATCAGGTACAACGCT 176
Query 138 AAGCGTAGGCATTGGCGCAGAACCAAGCTTGGATTCTAAGAG 179
||||||||||| |||||| | |||||||| |||||||| |||
Sbjct 177 AAGCGTAGGCACTGGCGCCGTACCAAGCTAGGATTCTA-GAG 217
> AT5G42130.1 | Symbols: | Mitochondrial substrate carrier family
protein | chr5:16835299-16836839 REVERSE LENGTH=1541
Length=1541
Score = 52.8 bits (28), Expect = 1e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 155 CAGAACCAAGCTTGGATTCTAAGAGGTT 182
||||||||||||||||||||||||||||
Sbjct 1345 CAGAACCAAGCTTGGATTCTAAGAGGTT 1372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8752435074
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5