BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932653

Length=259
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G09150.2 | Symbols:  | T-complex protein 11 | chr4:5828519-5...   303    4e-82


> AT4G09150.2 | Symbols:  | T-complex protein 11 | chr4:5828519-5833676 
FORWARD LENGTH=3732
Length=3732

 Score =  303 bits (164),  Expect = 4e-82
 Identities = 183/192 (95%), Gaps = 2/192 (1%)
 Strand=Plus/Plus

Query  9     TTGGTGGAAACAATGCTACGAAAAATCGGAGCAGCTTCTCTCTCAGACAAAGTCATAGAG  68
             |||||||||||||||||| |||| |||||||||||||||||||| ||||| |||||||||
Sbjct  3385  TTGGTGGAAACAATGCTAAGAAAGATCGGAGCAGCTTCTCTCTCGGACAAGGTCATAGAG  3444

Query  69    GTTTCAAACATTCTTGTTCTTGTGGC-A-AGTGTCACGTTCTGTTCATGGATTGTGGTAC  126
             |||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||| 
Sbjct  3445  GTTTCAGACATTCTTGTTCTTGTGGCAACAGTGTCACGTTCTGTTCATGGATTGTGGTAT  3504

Query  127   GAAGAATTGCTGAAGAAACCGAATTAAGAGACTATGTGGACCAATGGACCAGTGTGGGTT  186
             ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  3505  GAAGAATTGCTAAAGAAACCGAATTAAGAGACTATGTGGACCAATGGACCAGTGTGGGTT  3564

Query  187   TGTTTATGGTTG  198
             ||||||||||||
Sbjct  3565  TGTTTATGGTTG  3576



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11812921015


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5