BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932662
Length=455
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25250.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 425 1e-118
> AT2G25250.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G32020.1);
Has 30 Blast hits to 30 proteins in 7 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 28; Viruses -
0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:10753835-10754713
FORWARD LENGTH=879
Length=879
Score = 425 bits (230), Expect = 1e-118
Identities = 360/419 (86%), Gaps = 23/419 (5%)
Strand=Plus/Plus
Query 56 TCATAAAAAATCGGTAACAAATCGCCGTCGCCGGAGTCCGCCACGTCACCAAACCCCGAT 115
|||||||||| || | || ||||||||||||||||||||| || |||||||| ||| |||
Sbjct 180 TCATAAAAAACCGATCACCAATCGCCGTCGCCGGAGTCCGTCAAGTCACCAATCCCAGAT 239
Query 116 CTCTCATCCTCCTCCGCCTCCTC-TCAACCACACCAATCCGGTACGAATTCTGAAACGTG 174
|||||||||||||||| |||||| | ||||||||||||| |||||||||||||| ||||
Sbjct 240 CTCTCATCCTCCTCCGTCTCCTCAT-AACCACACCAATCATGTACGAATTCTGAAGCGTG 298
Query 175 GCGAAGATATCACCGTTAAGATACCAATTGAAAAGCCAGATCTGAAACT-TAACCGTCAA 233
|||||||||||| |||||||||||| |||||||| |||||||||||| | ||| |||||
Sbjct 299 GCGAAGATATCAACGTTAAGATACCGATTGAAAAACCAGATCTGAAA-TCTAATCGTCAG 357
Query 234 ATCGGTTCAGATCCGGTTAAGATTTCGGA-TCCGATTAGAATTCCAAACCGGAAA-CCGA 291
||||| ||||||||| | || ||||| || |||||| |||||| |||| |||||| || |
Sbjct 358 ATCGGATCAGATCCGATGAAAATTTC-GACTCCGATCAGAATTTCAAATCGGAAATCC-A 415
Query 292 TGCCGGCTTTGTTTTACGCTGGTCCAGTCACATCAACCTCTCCGCCGCCTAGCGAAGTCC 351
||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||
Sbjct 416 TGCCGGCTTTGTTTTACGCTGGTCCAGTCACATCAACATCTCCGCCGCCGAGTGAAGTCC 475
Query 352 CTTTACCGGCGTTCTTCGCTAAGAAAAACGTC------T-C---C-GA----TGCAACTA 396
|||||||||| ||||||||||| |||| |||| | | | || |||||| |
Sbjct 476 CTTTACCGGCTTTCTTCGCTAATAAAACCGTCGCCGGATTCAAACCGACCGATGCAACCA 535
Query 397 ATGATCTCATCAGAATCCTGCGTTTGGATATCGCATGATTCATTTCTTTCTCCGATCAT 455
| ||||| |||| ||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 536 ACGATCTGATCAAAATCCTGCGATTAGATATCGCATGATTCATTTCTTTCTCCGATCAT 594
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21665399819
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5