BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932663

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G03200.1 | Symbols:  | Eukaryotic aspartyl protease family p...   359    2e-98


> AT2G03200.1 | Symbols:  | Eukaryotic aspartyl protease family 
protein | chr2:966451-967918 REVERSE LENGTH=1468
Length=1468

 Score =  359 bits (194),  Expect = 2e-98
 Identities = 272/309 (88%), Gaps = 8/309 (3%)
 Strand=Plus/Plus

Query  200   GATGACTATAGATTGACGAAACTTGACTTGTGCTTCAAGTTACCTAATGCAGTCAAGAAT  259
             ||||||| | |||  |||  ||||||||||||||||||||||||| |||| | |||||||
Sbjct  1129  GATGACTCTGGATCCACGGGACTTGACTTGTGCTTCAAGTTACCTGATGCTGCCAAGAAT  1188

Query  260   ATTGATGTTCCTAAGATGA-TTTTCATTTTAAAGGT-TTGGATTTGGAGCTTTCAGGAAA  317
             |||| |||||||||||||| ||||||||||||||||  | |||||||||||| | ||| |
Sbjct  1189  ATTGCTGTTCCTAAGATGATTTTTCATTTTAAAGGTGCT-GATTTGGAGCTTCCCGGAGA  1247

Query  318   AAATTACATGGTGGTGGATTCAATCACCGGCGTTTTGGTTTTTTGCCATGGGAAGTTCT-  376
              || |||||||||| |||||||| |||||||||||| || ||| ||||||||||||||| 
Sbjct  1248  GAACTACATGGTGGCGGATTCAAGCACCGGCGTTTT-GTGTTTGGCCATGGGAAGTTCTA  1306

Query  377   ATCGGGATGTCTGTTTTTGAAAATGTTCAGCAGCTGAATTTTAATGTACTTCATGATCTT  436
             || ||||||||| |||| | ||||||||| |||| |||||||||||||||||||||||||
Sbjct  1307  AT-GGGATGTCTATTTTCGGAAATGTTCAACAGCAGAATTTTAATGTACTTCATGATCTT  1365

Query  437   GAGAAAGAAACGGTGTCATGTGTTCCCACTAAATGTGGAAAATTGTAGATTTT-AATT-G  494
             ||||||||||||||||| | |||||||||| |||||||||||||||||||||| |||| |
Sbjct  1366  GAGAAAGAAACGGTGTCGTTTGTTCCCACTGAATGTGGAAAATTGTAGATTTTTAATTTG  1425

Query  495   TTTGTTTTT  503
             ||| |||||
Sbjct  1426  TTTTTTTTT  1434



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24062156413


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5