BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932672
Length=238
Score E
Sequences producing significant alignments: (Bits) Value
AT3G63190.1 | Symbols: RRF, HFP108, cpRRF, AtcpRRF | ribosome r... 211 2e-54
> AT3G63190.1 | Symbols: RRF, HFP108, cpRRF, AtcpRRF | ribosome
recycling factor, chloroplast precursor | chr3:23342582-23344773
REVERSE LENGTH=1240
Length=1240
Score = 211 bits (114), Expect = 2e-54
Identities = 176/204 (86%), Gaps = 11/204 (5%)
Strand=Plus/Plus
Query 41 AGATTCGTGTTTGAGGATAATCGATACGGCGAGA------TATGCACGCTTAATTGCGTG 94
|||||||||||||||||||||| | |||||| | | | ||||||||||||||||
Sbjct 220 AGATTCGTGTTTGAGGATAATCTCTTCGGCGATATCTCCCTCTACACGCTTAATTGCGTG 279
Query 95 TTCGTTAAAGACCGACAAGCTTCCGCTCGGTGCTGCCGTCAGTCTCTCCGGTGGCCCCGT 154
|||||| ||||| |||||||||||||||||||| | ||||| ||||||||||||||||||
Sbjct 280 TTCGTTCAAGACAGACAAGCTTCCGCTCGGTGCCGGCGTCAATCTCTCCGGTGGCCCCGT 339
Query 155 TGTCAAGCGGTCTCTACAGAAGAGGCAGATTGGTGATAAGCTTTTCAAACTATTGAAGAA 214
||||||||| |||||||||||||| | ||||||||||| | | | | |||||||||||
Sbjct 340 TGTCAAGCGCTCTCTACAGAAGAG--A--TTGGTGATAAGGTCTGCTA-CTATTGAAGAA 394
Query 215 ATAGAAGCAGAGAAGTCTACTATT 238
|||||||||||||||||| |||||
Sbjct 395 ATAGAAGCAGAGAAGTCTGCTATT 418
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10757298286
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5