BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932673
Length=1082
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25300.1 | Symbols: | Galactosyltransferase family protein ... 1690 0.0
AT4G32120.1 | Symbols: | Galactosyltransferase family protein ... 1081 0.0
> AT2G25300.1 | Symbols: | Galactosyltransferase family protein
| chr2:10771694-10774294 REVERSE LENGTH=1407
Length=1407
Score = 1690 bits (915), Expect = 0.0
Identities = 1010/1056 (96%), Gaps = 6/1056 (1%)
Strand=Plus/Plus
Query 10 TCGTGGATTGAGATGGAGACCTTACCCACGACGGTTCCGTCAAAATCAGAACGACGAGCT 69
||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||
Sbjct 127 TCGTGGATTGAGATGGAGAGCTTACCCACGACGGTTCCCTCCAAATCAGAACGACGAGCT 186
Query 70 CGGTCCTCCAAGTCTTCTCAGAGTTCCTCTAAGCCCTCAGTTATAATGGCTTTCTTCTCT 129
|| |||||||||| ||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 187 CGTTCCTCCAAGTTTTCTCAGAGTTCCTCTAAGCCTTCGGTTATAATGGCTTTCTTCTCT 246
Query 130 TGCGTCGCTTGGCTCTATGTCGCTGGTC-GGTTATGGCAAGATGCAGAGAATAGAGTGGT 188
||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||
Sbjct 247 TGCGTCGCTTGGCTCTACGTCGCTGG-CAGGTTATGGCAAGATGCAGAGAATAGAGTGGT 305
Query 189 ACTCAATAATATTCTTAAGAAGAGTTATCATCAGAAGACTAAGGTTCTTACGGTTAATGA 248
|||||||||||| ||||||||||||||| |||||||| |||||||||||||||| ||||
Sbjct 306 ACTCAATAATATACTTAAGAAGAGTTATGATCAGAAGCCTAAGGTTCTTACGGTGGATGA 365
Query 249 CAAG-TTGATCGTCCTAGGATGCAAAGATCTTGAGAGGAGAATTGTTGAAACTGAAATGG 307
|||| || || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 CAAGCTT-ATGGTCCTAGGATGCAAAGATCTTGAGAGGAGAATTGTTGAAACTGAAATGG 424
Query 308 AGTTGACTCTTGCAAAGAGTCAAGGCTATCTGAAAAAC-CAGAAGAGTGGTTCTTCTTCA 366
|||||||||| || ||||||||||||||||| || ||| | || |||||||| ||||||
Sbjct 425 AGTTGACTCTGGCTAAGAGTCAAGGCTATCTTAAGAACTTA-AAAAGTGGTTCGTCTTCA 483
Query 367 GGGAAGAAATTGCTTGCTGTGATTGGAGTTTATACAGGTTTTGGAAGTCATTTGAGGCGT 426
||||||||||| ||||||||||||||||| ||| |||| ||||| |||||| ||||||||
Sbjct 484 GGGAAGAAATTACTTGCTGTGATTGGAGTGTATTCAGGCTTTGGTAGTCATCTGAGGCGT 543
Query 427 AATACATTTAGAGGGACTTGGATGCCACAAGGTGATGCTTTGAGGAAACTTGAGGAAAGA 486
||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 544 AATACATTTCGAGGGTCTTATATGCCACAAGGTGATGCTTTGAGGAAACTTGAGGAAAGA 603
Query 487 GGAATTGTCATACGTTTTGTGATTGGTCGAAGTCCAAATCGGGGTGATAGCTTAGATCGA 546
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 604 GGAATTGTCATACGTTTTGTGATTGGTCGAAGTCCAAATCGAGGTGATAGCTTAGATCGA 663
Query 547 AAAATCGACGAGGAAAATCAAGCAAGAAAAGATTTTTTGATTCTTGAGAATCACGAGGAG 606
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 664 AAAATCGACGAGGAAAATCAAGCAAGAAAAGATTTTTTGATTCTTGAGAATCATGAGGAG 723
Query 607 GCCCAAGAAGAGCTACCCAAGAAAGTGAAGTTCTTCTTTAGTGCTGCTGTTCAAAACTGG 666
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 GCCCAAGAAGAGCTAGCCAAGAAAGTGAAGTTCTTCTTTAGTGCTGCTGTTCAAAACTGG 783
Query 667 GATGCACAGTTTTACATCAAAGTTGATGACAATATTGACCTAGATCTTGAGGGGTTGATT 726
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 784 GATGCAGAGTTTTACATCAAAGTTGATGACAATATTGACTTAGATCTTGAGGGGTTGATT 843
Query 727 GGCCTTCTTGAAAGCCGGCGTGGTCAAGATGCTGCTTACATTGGGTGTATGAAGTCTGGT 786
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 GGCCTTCTTGAAAGTCGGCGTGGTCAAGATGCTGCTTACATTGGGTGTATGAAGTCTGGT 903
Query 787 GAAGTGGTTGCTGAAGAGGGAGGGCAATGGTATGAGCCAGAATGGTGGAAATTTGGGGAC 846
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 904 GAAGTGGTTGCTGAAGAGGGAGGGAAATGGTATGAGCCAGAATGGTGGAAATTTGGGGAC 963
Query 847 GAAAAATCGTACTTCCGTCATGCAGCTGGTTCGCTGTTAATACTATCCAAAAATTTGGCT 906
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 964 GAAAAATCGTACTTCCGTCATGCAGCTGGTTCGCTGTTAATACTATCCAAAACTTTGGCT 1023
Query 907 CAGTATGTAAACATAAACAGTGGATCATTGAAGACATATGCATTTGATGATACCTCTATA 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 CAGTATGTAAACATAAACAGTGGATCATTGAAGACATATGCATTTGATGATACCTCTATA 1083
Query 967 GGATCTTGGATGATTGGTGTTCAGGCAACTTATATTGACGACAATCGCCTTTGCTGCAGC 1026
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1084 GGATCTTGGATGATTGGTGTTCAGGCAACTTATATAGACGACAATCGCCTTTGCTGCAGC 1143
Query 1027 AGCATCAGACAAGACAAGGTGTGTTCTGTGGCTTGA 1062
||||||||||||||||||||||||||||||||||||
Sbjct 1144 AGCATCAGACAAGACAAGGTGTGTTCTGTGGCTTGA 1179
> AT4G32120.1 | Symbols: | Galactosyltransferase family protein
| chr4:15516784-15519855 REVERSE LENGTH=1652
Length=1652
Score = 1081 bits (585), Expect = 0.0
Identities = 908/1064 (85%), Gaps = 21/1064 (2%)
Strand=Plus/Plus
Query 11 CGTGGATTGAGATGGAGACCTTACCCACGACGGT-TCCGTCAAAATCAGAACGACGAGCT 69
||||||| |||||||||| |||||| |||||||| || | |||||||| || |||| |
Sbjct 158 CGTGGATAGAGATGGAGAGCTTACCAACGACGGTCTCAG-GGAAATCAGACCGGCGAGGT 216
Query 70 CGGTCCTCCAAGTCTTCTCAGAGTTCCTCTAAGCCCTCAGTTATAATGGCTTTCTTCTCT 129
||| |||||| ||||||| |||| |||||||| |||| |||| |||||||||
Sbjct 217 AGGTTTTCCAAG---TCTCAGAACACCTCCAAGCCCTCTCTTATCTTGGCCTTCTTCTCT 273
Query 130 TG-CGTCGCTTGGCTCTATGTCGCTGGTCGGTTATGGCAAGATGCAG-AGAATAGAGTGG 187
|| | | ||||||||||| |||||||| ||||||||||||||||| | || | |||| |
Sbjct 274 TGTC-TTGCTTGGCTCTACGTCGCTGGCCGGTTATGGCAAGATGC-GCAGTACAGAGCAG 331
Query 188 TACTCAATAATATTCTTAAGAAGAGTTATCATCAGAAGACTAAGGTTCTTACGGTTAATG 247
|||||||| | | ||||||| || |||| |||||| | |||||||||||||||| | |
Sbjct 332 CACTCAATACTGTGCTTAAGATGAATTATGATCAGAGGCCTAAGGTTCTTACGGTGGAGG 391
Query 248 AC-AAGTTGATCGTCCTAGGATGCAAAGATCTTGAGAGGAGAATTGTTGAAACTGAAATG 306
|| || ||| | ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 392 ACAAACTTG-TGGTCCTTGGATGCAAAGATCTTGAGAGGAGAATTGTTGAAACTGAAATG 450
Query 307 GAGTTGACTCTTGCAAAGAGTCAAGGCTATCTGAAAAACCAGAAGAGTGGT-TCTTCTTC 365
|||||| | | |||||||||||||||||||| ||||| ||||| |||| | ||||||||
Sbjct 451 GAGTTGGCACAGGCAAAGAGTCAAGGCTATCTTAAAAAACAGAAAAGTG-TCTCTTCTTC 509
Query 366 AGGGAAGAAATTGCTTGCTGTGATTGGAGTTTATACAGGTTTTGGAAGTCATTTGAGGCG 425
|||||||||| |||| ||||| ||||||||||| ||||| ||||||||||| |||| |||
Sbjct 510 AGGGAAGAAAATGCTAGCTGTTATTGGAGTTTACACAGGCTTTGGAAGTCACTTGAAGCG 569
Query 426 TAATACATTTAGAGGGACTTGGATGCCACAAGGTGATGCT-TTGAGGAAACTTGAGGAAA 484
|||| ||||||||| |||||||||||| || ||||||| || | |||||||||||||
Sbjct 570 CAATAAATTTAGAGGCTCTTGGATGCCACGAGATGATGCTCTTAAA-AAACTTGAGGAAA 628
Query 485 GAGGAATTGTCATACGTTTTGTGATTGGTCGAAGTCCAAATCGGGGTGATAGCTTAGATC 544
||||| |||||||||| |||||||||||||| ||| | || || ||||||||| |||||
Sbjct 629 GAGGAGTTGTCATACGCTTTGTGATTGGTCGGAGTGCTAACCGAGGTGATAGCCTAGATA 688
Query 545 GAAAAATCGACGAGGAAAATCAAGCAAGAAAAGATTTTTTGATTCTTGAGAATCACGAGG 604
||||||| ||||| ||||||| |||| ||||| |||||||||||||||||||||||||
Sbjct 689 GAAAAATTGACGAAGAAAATCGTGCAACTAAAGACTTTTTGATTCTTGAGAATCACGAGG 748
Query 605 AGGCCCAAGAAGAGCTACCCAAGAAAGTGAAGTTCTTCTTTAGTGCTGCTGTTCAAAACT 664
| |||||||||||| |||| ||||||||||||||||||| |||||||||||||| || |
Sbjct 749 AAGCCCAAGAAGAGTTACCGAAGAAAGTGAAGTTCTTCTACAGTGCTGCTGTTCAGAATT 808
Query 665 GGGATGCACAGTTTTACATCAAAGTTGATGACAATATTGACCTAGATCTTGAGGGGTTGA 724
|||| ||| ||||||| |||||||||||||||| ||||| | |||||||||||| |||
Sbjct 809 GGGACGCAGAGTTTTATGTCAAAGTTGATGACAACGTTGACTTGGATCTTGAGGGGATGA 868
Query 725 TTG-GCCTTCTTGAAAGCCGGCGTGGTCAAGATGCTGCTTACATTGGGTGTATGAAGTCT 783
||| || |||||||||| || ||| ||||||||| ||||||||||||||| ||||| |||
Sbjct 869 TTGCGC-TTCTTGAAAGTCGTCGTAGTCAAGATGGTGCTTACATTGGGTGCATGAAATCT 927
Query 784 GGTGAAGTGGTTGCTGAAGAGGGAGGGCAATGGTATGAGCCAGAATGGTGGAAATTTGGG 843
|| || ||| || ||||||||||| | |||||||||||||| || |||||||||||||||
Sbjct 928 GGAGATGTGATTACTGAAGAGGGAAGTCAATGGTATGAGCCTGAGTGGTGGAAATTTGGG 987
Query 844 GACGAAAAATCGTACTTCCGTCATGCAGCTGGTTCGCTGTTAATACTATCCAAA-AATTT 902
||||| |||||||| |||||||||||| ||||||||||| ||||||| || ||| ||| |
Sbjct 988 GACGACAAATCGTATTTCCGTCATGCAACTGGTTCGCTGGTAATACTCTC-AAAGAATCT 1046
Query 903 GGCTCAGTATGTAAACATAAACAGTGGATCATTGAAGACATATGCATTTGATGATACCTC 962
|||||||||||| || ||||||||||||| |||||||||||||| |||||||||||| |
Sbjct 1047 GGCTCAGTATGTCAATATAAACAGTGGATTGTTGAAGACATATGCGTTTGATGATACCAC 1106
Query 963 TATAGGATCTTGGATGATTGGTGTTCAGGCAACTTATATTGACGACAATCGCCTTTGCTG 1022
|| ||||| ||||||||||| || |||||||| ||||| ||||||||||||||||||||
Sbjct 1107 CATTGGATCATGGATGATTGGCGTCCAGGCAACATATATAGACGACAATCGCCTTTGCTG 1166
Query 1023 CAGCAGCATCA-GACAAGACAAGGTGTGTTCTGTGGCTTGATCA 1065
|||||||| || ||||||| || |||||||| |||| ||||||
Sbjct 1167 CAGCAGCA-CAAGACAAGAAAAAGTGTGTTCCATGGCATGATCA 1209
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53011775520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5