BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932682
Length=1054
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21450.1 | Symbols: | Protein kinase superfamily protein | ... 717 0.0
> AT3G21450.1 | Symbols: | Protein kinase superfamily protein
| chr3:7553965-7555236 REVERSE LENGTH=813
Length=813
Score = 717 bits (388), Expect = 0.0
Identities = 563/644 (87%), Gaps = 25/644 (4%)
Strand=Plus/Plus
Query 402 ATCCAACATAGAAATTTGGTTAATCTGCTCGGTTATTGTTGCGACGACGAGAACCAATTG 461
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 184 ATCCAACATAAAAATTTGGTTAATCTGCTCGGTTATTGTTGCGACGACGAGAACCAATCG 243
Query 462 CTCGTCTTTGAGTATATGGTCAACGGTAGCGTGCGAGATTATCTAGATGCCTCTAGGGAC 521
|||||||||||||||||||||||||||||||| |||||||||||||| | ||||| |||
Sbjct 244 CTCGTCTTTGAGTATATGGTCAACGGTAGCGTCCGAGATTATCTAGA-G--TCTAGCGAC 300
Query 522 TTAACATTCAAGAAAAGGATTTCCATAGCTCTTGATGCAGCCAAAGGGTTGCTACACTTG 581
||||| ||||||||||| || || |||||||||||||||||||||||||| |||||||||
Sbjct 301 TTAACGTTCAAGAAAAGAATATCTATAGCTCTTGATGCAGCCAAAGGGTTACTACACTTG 360
Query 582 CACAACTTAGATCCTCCGGTACAACACAAGAGATTTACGACGTCTAAAGTTTTGCTTGAT 641
||||||||||||||||| ||||||||||||||||||||| || |||||||||||| |||
Sbjct 361 CACAACTTAGATCCTCCAGTACAACACAAGAGATTTACGGCGAGTAAAGTTTTGCTCGAT 420
Query 642 GCCGACCTCAATGCCAAGGTATCAGATCCAGG-AATGTTGGGACTGCTTGAAGCACGTGA 700
||| ||||||||||||||||||||||| || |||||||||||||||| ||||| ||||
Sbjct 421 GCCAACCTCAATGCCAAGGTATCAGATGG-GGCAATGTTGGGACTGCTTCAAGCAAGTGA 479
Query 701 TCTTCGTCTAGTTAATCCAAGAGGTGGTTTAGCGGAGACCATTGATGTTTTTAGCTTCGG 760
| ||| ||| | ||||||||||||||||| || |||||| |||||||| | |||||||||
Sbjct 480 TATTCATCTCGCTAATCCAAGAGGTGGTTCAGAGGAGACAATTGATGTGTATAGCTTCGG 539
Query 761 GTTGTTCCTTCTAGAGCTTATCACCGGTGAAAAACCTG-ATGTGTTTGAATCAAACGAAG 819
||||||||||||||||||||||||| || |||| |||| | |||| ||||| || | |
Sbjct 540 GTTGTTCCTTCTAGAGCTTATCACCTGTCAAAACCCTGGAC-TGTTACAATCAGACTATG 598
Query 820 AAATTGTT-CAATGGA-TACTTCC-G-AGAATG-TTCACTAGATCATCGTTC-AAGCCTT 873
|| || || ||||||| || | || | |||| ||||| ||| |||||||| |||| ||
Sbjct 599 AAGTT-TTACAATGGAATA-TACCTGCAGAAACATTCACGAGACCATCGTTCCAAGC-TT 655
Query 874 ATATGA-AGATTACGTTGGAATGCTTG-AATTATCCCGCAATAGATCGCCCAAAGATGGA 931
|| ||| | ||||||| |||||||||| ||| ||||| | ||| ||||||||||||||||
Sbjct 656 ATCTGATA-ATTACGTCGGAATGCTTGGAAT-ATCCCCCGATAAATCGCCCAAAGATGGA 713
Query 932 TGTGGTTGTGACCGAGCTTGAGACGATTTACCAGAATGAAGTCTTCAGTGAAGA-CCGTG 990
|||||| ||||||||||||||||||||||||| |||| || ||||||| || || ||
Sbjct 714 TGTGGTCGTGACCGAGCTTGAGACGATTTACCTTAATG---TCATCAGTGA-GAACCATG 769
Query 991 GGGTTGCTCTAGGAAGTGAGCTTTTTAACATTACCATTGAGTAA 1034
|||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 770 AGGTTTCTCTAGGAAGTGAGCTTTTTAACATAACCATTGAGTAA 813
Score = 211 bits (114), Expect = 1e-53
Identities = 147/163 (90%), Gaps = 2/163 (1%)
Strand=Plus/Plus
Query 156 ATGGAGGAATTAAGGCAAGCAACGAACAATTTTGACATGGCTAATACTATTGGGCTTGGA 215
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1 ATGGAGGAATTAAGGCAAGCAACGAACAATTTTGACATGGATAATACTATTGGGCATGGA 60
Query 216 AGTTACGGAGTAGTTTATACTGGGCTGATCGGAG-ACAAGATCGTTGTGATCAAAAGGGA 274
||| ||||| |||||| |||||||||||| || ||| | ||||||||||||||||||
Sbjct 61 AGTCACGGAACAGTTTACACTGGGCTGATCA-AGGACATGCCCGTTGTGATCAAAAGGGA 119
Query 275 GTGGTGTGGTCTCCAACCTAGATTCTTGGCTGAGGTATACACA 317
||||||| ||| ||||||||||||||||| ||||||| |||||
Sbjct 120 GTGGTGTAGTCCCCAACCTAGATTCTTGGATGAGGTACACACA 162
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51690937263
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5