BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932683

Length=212
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G38840.1 | Symbols:  | SMAD/FHA domain-containing protein  |...   154    3e-37


> AT5G38840.1 | Symbols:  | SMAD/FHA domain-containing protein 
 | chr5:15551296-15555077 FORWARD LENGTH=2472
Length=2472

 Score =  154 bits (83),  Expect = 3e-37
 Identities = 168/203 (83%), Gaps = 29/203 (14%)
 Strand=Plus/Plus

Query  14   CATCGGCGATGGATCCTCCTCCACCGCGAAACCCTAGCCATGATAATTCCGAG--T-CTG  70
            |||||||||||||||||||||||||||||||||||||||||||| | | ||||  | |||
Sbjct  41   CATCGGCGATGGATCCTCCTCCACCGCGAAACCCTAGCCATGAT-A-T-CGAGCCTCCTG  97

Query  71   AACCAAACACTACATCATCAATTCCTCAAAGCGACGAATCCTCAACGCTAACCGAAGTCT  130
            ||||||||| |||||||  | |||| |||||||| | |     ||| ||   |  |    
Sbjct  98   AACCAAACAGTACATCA--ATTTCC-CAAAGCGATG-A-----AAC-CT---C--A----  138

Query  131  CATCGATGAATCCTCCACCTCCCAGAAACCCTAACCTACCTGATCTGAAGACAACGGAA-  189
             | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct  139  -A-CGATGAATCCTCCACCTCCCAGAAACCCTAACCCACCTGATCTGAAGACAACGGAAG  196

Query  190  TAAGTAGTAGAGCCCGAACCAAT  212
            || || ||||||||||| |||||
Sbjct  197  TA-GTTGTAGAGCCCGAGCCAAT  218



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9450336812


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5