BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg932690 Length=494 Score E Sequences producing significant alignments: (Bits) Value AT2G25380.1 | Symbols: | pseudogene of zinc finger protein-rel... 409 2e-113 AT2G25360.1 | Symbols: | RING/U-box superfamily protein | chr2... 405 2e-112 AT2G25370.1 | Symbols: | RING/U-box superfamily protein | chr2... 351 3e-96 > AT2G25380.1 | Symbols: | pseudogene of zinc finger protein-related | chr2:10810362-10812243 FORWARD LENGTH=1395 Length=1395 Score = 409 bits (221), Expect = 2e-113 Identities = 352/414 (85%), Gaps = 13/414 (3%) Strand=Plus/Plus Query 1 GCCCATATCCAAACTGTTCAATGTTGATGTCCAAAACCGAGCTCTCTAAAT-TAACCGAT 59 |||||||||||||||| ||| |||||||||||| ||||||||| || | | | | ||| Sbjct 848 GCCCATATCCAAACTGCTCATTGTTGATGTCCATAACCGAGCTTTCGAGCTCT-TCTGAT 906 Query 60 GAAGCGTCAGACCAATCCAATGTTAGGACATGTGTCCAATGCTATGGACTCTTCTGCATT 119 ||||| | ||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 907 GAAGCCTTGGACCAATCCAATGTTAGGACATGTGTCAAATGCAATGGACTCTTCTGCATT 966 Query 120 GATTGCAAAGTACCATCGCATTCTGATTTGTCGTGTGCTGATTACAAGAAACTTCACCCT 179 ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 967 GATTGTAAAGTACCATCACATTCTGATTTGTCGTGTGCTGATTACAAGAAACTTCACCCT 1026 Query 180 GACCCTCTAATTGATGACTTGAAGCTAAAGTTTCTGGCAATGGACAAAAA-GTGGCGTCA 238 || | | || |||||||| | ||||||||||| ||||||| || ||| | ||||||||| Sbjct 1027 GAACTTTTAGTTGATGACATAAAGCTAAAGTTACTGGCAAACGA-AAATATGTGGCGTCA 1085 Query 239 GTGTGTAAAGTGTAAGAACATGATTGAACTTTCTTATGGCTGCAACCACATGACTTGCAG 298 ||||| | ||||| | || |||||||||||||| |||| ||||| |||||||||||||| Sbjct 1086 ATGTGTCATGTGTAGGCACTTGATTGAACTTTCTGATGGTTGCAATCACATGACTTGCAG 1145 Query 299 ATGTGGATATCAGTTTTGCT-TCCAATGTGGGATTGAATGGAAGAAGAACCA-GAGGACT 356 |||||||||||||||||||| | | ||||| || ||||||||||| ||||| || ||| Sbjct 1146 ATGTGGATATCAGTTTTGCTATGGA-TGTGGAATCGAATGGAAGAAAAACCAAGAC-ACT 1203 Query 357 TGCCCTTCTGCTGGATGCCTACAAACGGGACATGGTGATTATGAT-GATGATGA 409 |||||||||| | |||| ||| |||||| |||||| |||| | |||||| Sbjct 1204 TGCCCTTCTGGT---TGCCGGGAAATGGGACACGGTGATGCTGATAG-TGATGA 1253 > AT2G25360.1 | Symbols: | RING/U-box superfamily protein | chr2:10804249-10805761 FORWARD LENGTH=1122 Length=1122 Score = 405 bits (219), Expect = 2e-112 Identities = 396/476 (83%), Gaps = 34/476 (7%) Strand=Plus/Plus Query 1 GCCCATATCCAAACTGTTCAATGTTGATGTCCAAAACCGAGCTCTCTAAATTAACCGATG 60 |||||||||||||||| |||||| | ||||||||||||||||| | | | | | || Sbjct 530 GCCCATATCCAAACTGCTCAATGCTAATGTCCAAAACCGAGCT-T-T---CT-A--G-TG 580 Query 61 AAGCGTCAGACCAATCCAATGTTAGGACATGTGTCCAATGCTATGGACTCTTCTGCATTG 120 || || |||| |||||||| | | |||||| |||| | ||||||||||||||||| Sbjct 581 AA---TCCGACCTATCCAATGACCGTTCTTGTGTCAAATGTTGTGGACTCTTCTGCATTG 637 Query 121 ATTGCAAAGTACCATCGCATTCTGATTTGTCGTGTGCTGATTACAAGAAACTTCACCCTG 180 |||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||| || Sbjct 638 ATTGCAAAGTACCATCACATTCTGATTTGTCGTGTGCTGAGTACAAAAAACTTCACCATG 697 Query 181 ACCCTCTAATTGATGACTTGAAGCTAAAGTTTCTGGCAATGGACAAAAAGTGGCGTCAGT 240 |||||||| ||||||| ||||||||||||| ||| |||| ||||||||| |||||||||| Sbjct 698 ACCCTCTAGTTGATGAGTTGAAGCTAAAGTCTCTAGCAAAGGACAAAAAATGGCGTCAGT 757 Query 241 GTGTAAA-GTGTAAGAACATGATTGAACTTTCTTATGGCTGCAACCACATGACTTGCAGA 299 || ||| ||||| | ||||||| ||||||||| ||| |||||||||||||||||||||| Sbjct 758 GT-AAAATGTGTAGGCACATGATCGAACTTTCTCATGCCTGCAACCACATGACTTGCAGA 816 Query 300 TGTGGATATCAGTTTTGCTT-CCAATGTG-GGATTGAATGGAAGAA-GAACCAGAGGACT 356 ||||||||||||||||| || |||||||| || ||||||||||||| || ||| | |||| Sbjct 817 TGTGGATATCAGTTTTG-TTACCAATGTGAGG-TTGAATGGAAGAATGA-CCAAAAGACT 873 Query 357 TGCCCTTCTGCTGGATGCCTACAAACGGGACATGGTGATTATGATGATGATGACCA-A-- 413 ||| |||||| | ||||||| ||||||||||||| ||||||||||| |||| | | Sbjct 874 TGCTCTTCTGGT---TGCCTACTAACGGGACATGGTTATTATGATGATTATGATTATAAT 930 Query 414 GAA------TATGATTCTGAAG-AGGATACGGGTGATTACTCTTCCGATGAAGAAG 462 ||| ||||||| ||||| || |||| || |||||| ||| |||||||||| Sbjct 931 GAACCGGAATATGATTTTGAAGTAG-ATACATGTAATTACTATTCTGATGAAGAAG 985 > AT2G25370.1 | Symbols: | RING/U-box superfamily protein | chr2:10806700-10809794 FORWARD LENGTH=1812 Length=1812 Score = 351 bits (190), Expect = 3e-96 Identities = 297/346 (86%), Gaps = 18/346 (5%) Strand=Plus/Plus Query 1 GCCCATATCCAAACTGTTCAATGTTGATGTCCAAAACCGAGCTCTCTAAATTAACCGA-T 59 |||||||||||||||| || ||| |||||||||||||||| || | | || | | Sbjct 1169 GCCCATATCCAAACTGCTCGATGCTGATGTCCAAAACCGA----ACT--A-T--CC-AGT 1218 Query 60 GAAGCGTCAGACCAATCCAATGTTAGGACATGTGTCCAATGCTATGGACTCTTCTGCATT 119 ||||| | ||| |||||||||||||||||||||| |||| | |||||| ||||||||| Sbjct 1219 GAAGC--C-GACTTATCCAATGTTAGGACATGTGTCAAATGTTGTGGACTATTCTGCATT 1275 Query 120 GATTGCAAAGTACCATCGCATTCTGATTTGTCGTGTGCTGATTACAAGAAACTTCACCCT 179 ||||||||||||||||||||| ||||||| |||| || |||||||||||||||||||||| Sbjct 1276 GATTGCAAAGTACCATCGCATACTGATTTATCGTATGATGATTACAAGAAACTTCACCCT 1335 Query 180 GACCCTCTAATTGATGACTTGAAGCTAAAGTTTCTGGCAATGGACAAAAAGTGGCGTCAG 239 ||||||||| |||||||||||||||| |||| ||| |||| ||||||| ||||||||| Sbjct 1336 GACCCTCTAGTTGATGACTTGAAGCTCAAGTCTCTCGCAAACGACAAAATGTGGCGTCAA 1395 Query 240 TGTGT-AAAGTGTAAGAACATGATTGAACTTTCTTATGGCTGCAACCACATGACTTGCAG 298 ||||| ||| |||| | | ||||||||||||||| ||||||| ||||||||||||||||| Sbjct 1396 TGTGTCAAA-TGTAGGCATATGATTGAACTTTCTCATGGCTGTAACCACATGACTTGCAG 1454 Query 299 ATGTGGATATCAGTTTTGCT-TCCAATGTGGGATTGAATGGAAGAA 343 |||||| ||| ||||||||| | ||||||||||||||||| |||| Sbjct 1455 ATGTGGTTATGAGTTTTGCTATG-AATGTGGGATTGAATGGCAGAA 1499 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23559814943 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5