BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932690
Length=494
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25380.1 | Symbols: | pseudogene of zinc finger protein-rel... 409 2e-113
AT2G25360.1 | Symbols: | RING/U-box superfamily protein | chr2... 405 2e-112
AT2G25370.1 | Symbols: | RING/U-box superfamily protein | chr2... 351 3e-96
> AT2G25380.1 | Symbols: | pseudogene of zinc finger protein-related
| chr2:10810362-10812243 FORWARD LENGTH=1395
Length=1395
Score = 409 bits (221), Expect = 2e-113
Identities = 352/414 (85%), Gaps = 13/414 (3%)
Strand=Plus/Plus
Query 1 GCCCATATCCAAACTGTTCAATGTTGATGTCCAAAACCGAGCTCTCTAAAT-TAACCGAT 59
|||||||||||||||| ||| |||||||||||| ||||||||| || | | | | |||
Sbjct 848 GCCCATATCCAAACTGCTCATTGTTGATGTCCATAACCGAGCTTTCGAGCTCT-TCTGAT 906
Query 60 GAAGCGTCAGACCAATCCAATGTTAGGACATGTGTCCAATGCTATGGACTCTTCTGCATT 119
||||| | ||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 907 GAAGCCTTGGACCAATCCAATGTTAGGACATGTGTCAAATGCAATGGACTCTTCTGCATT 966
Query 120 GATTGCAAAGTACCATCGCATTCTGATTTGTCGTGTGCTGATTACAAGAAACTTCACCCT 179
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 GATTGTAAAGTACCATCACATTCTGATTTGTCGTGTGCTGATTACAAGAAACTTCACCCT 1026
Query 180 GACCCTCTAATTGATGACTTGAAGCTAAAGTTTCTGGCAATGGACAAAAA-GTGGCGTCA 238
|| | | || |||||||| | ||||||||||| ||||||| || ||| | |||||||||
Sbjct 1027 GAACTTTTAGTTGATGACATAAAGCTAAAGTTACTGGCAAACGA-AAATATGTGGCGTCA 1085
Query 239 GTGTGTAAAGTGTAAGAACATGATTGAACTTTCTTATGGCTGCAACCACATGACTTGCAG 298
||||| | ||||| | || |||||||||||||| |||| ||||| ||||||||||||||
Sbjct 1086 ATGTGTCATGTGTAGGCACTTGATTGAACTTTCTGATGGTTGCAATCACATGACTTGCAG 1145
Query 299 ATGTGGATATCAGTTTTGCT-TCCAATGTGGGATTGAATGGAAGAAGAACCA-GAGGACT 356
|||||||||||||||||||| | | ||||| || ||||||||||| ||||| || |||
Sbjct 1146 ATGTGGATATCAGTTTTGCTATGGA-TGTGGAATCGAATGGAAGAAAAACCAAGAC-ACT 1203
Query 357 TGCCCTTCTGCTGGATGCCTACAAACGGGACATGGTGATTATGAT-GATGATGA 409
|||||||||| | |||| ||| |||||| |||||| |||| | ||||||
Sbjct 1204 TGCCCTTCTGGT---TGCCGGGAAATGGGACACGGTGATGCTGATAG-TGATGA 1253
> AT2G25360.1 | Symbols: | RING/U-box superfamily protein | chr2:10804249-10805761
FORWARD LENGTH=1122
Length=1122
Score = 405 bits (219), Expect = 2e-112
Identities = 396/476 (83%), Gaps = 34/476 (7%)
Strand=Plus/Plus
Query 1 GCCCATATCCAAACTGTTCAATGTTGATGTCCAAAACCGAGCTCTCTAAATTAACCGATG 60
|||||||||||||||| |||||| | ||||||||||||||||| | | | | | ||
Sbjct 530 GCCCATATCCAAACTGCTCAATGCTAATGTCCAAAACCGAGCT-T-T---CT-A--G-TG 580
Query 61 AAGCGTCAGACCAATCCAATGTTAGGACATGTGTCCAATGCTATGGACTCTTCTGCATTG 120
|| || |||| |||||||| | | |||||| |||| | |||||||||||||||||
Sbjct 581 AA---TCCGACCTATCCAATGACCGTTCTTGTGTCAAATGTTGTGGACTCTTCTGCATTG 637
Query 121 ATTGCAAAGTACCATCGCATTCTGATTTGTCGTGTGCTGATTACAAGAAACTTCACCCTG 180
|||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||| ||
Sbjct 638 ATTGCAAAGTACCATCACATTCTGATTTGTCGTGTGCTGAGTACAAAAAACTTCACCATG 697
Query 181 ACCCTCTAATTGATGACTTGAAGCTAAAGTTTCTGGCAATGGACAAAAAGTGGCGTCAGT 240
|||||||| ||||||| ||||||||||||| ||| |||| ||||||||| ||||||||||
Sbjct 698 ACCCTCTAGTTGATGAGTTGAAGCTAAAGTCTCTAGCAAAGGACAAAAAATGGCGTCAGT 757
Query 241 GTGTAAA-GTGTAAGAACATGATTGAACTTTCTTATGGCTGCAACCACATGACTTGCAGA 299
|| ||| ||||| | ||||||| ||||||||| ||| ||||||||||||||||||||||
Sbjct 758 GT-AAAATGTGTAGGCACATGATCGAACTTTCTCATGCCTGCAACCACATGACTTGCAGA 816
Query 300 TGTGGATATCAGTTTTGCTT-CCAATGTG-GGATTGAATGGAAGAA-GAACCAGAGGACT 356
||||||||||||||||| || |||||||| || ||||||||||||| || ||| | ||||
Sbjct 817 TGTGGATATCAGTTTTG-TTACCAATGTGAGG-TTGAATGGAAGAATGA-CCAAAAGACT 873
Query 357 TGCCCTTCTGCTGGATGCCTACAAACGGGACATGGTGATTATGATGATGATGACCA-A-- 413
||| |||||| | ||||||| ||||||||||||| ||||||||||| |||| | |
Sbjct 874 TGCTCTTCTGGT---TGCCTACTAACGGGACATGGTTATTATGATGATTATGATTATAAT 930
Query 414 GAA------TATGATTCTGAAG-AGGATACGGGTGATTACTCTTCCGATGAAGAAG 462
||| ||||||| ||||| || |||| || |||||| ||| ||||||||||
Sbjct 931 GAACCGGAATATGATTTTGAAGTAG-ATACATGTAATTACTATTCTGATGAAGAAG 985
> AT2G25370.1 | Symbols: | RING/U-box superfamily protein | chr2:10806700-10809794
FORWARD LENGTH=1812
Length=1812
Score = 351 bits (190), Expect = 3e-96
Identities = 297/346 (86%), Gaps = 18/346 (5%)
Strand=Plus/Plus
Query 1 GCCCATATCCAAACTGTTCAATGTTGATGTCCAAAACCGAGCTCTCTAAATTAACCGA-T 59
|||||||||||||||| || ||| |||||||||||||||| || | | || | |
Sbjct 1169 GCCCATATCCAAACTGCTCGATGCTGATGTCCAAAACCGA----ACT--A-T--CC-AGT 1218
Query 60 GAAGCGTCAGACCAATCCAATGTTAGGACATGTGTCCAATGCTATGGACTCTTCTGCATT 119
||||| | ||| |||||||||||||||||||||| |||| | |||||| |||||||||
Sbjct 1219 GAAGC--C-GACTTATCCAATGTTAGGACATGTGTCAAATGTTGTGGACTATTCTGCATT 1275
Query 120 GATTGCAAAGTACCATCGCATTCTGATTTGTCGTGTGCTGATTACAAGAAACTTCACCCT 179
||||||||||||||||||||| ||||||| |||| || ||||||||||||||||||||||
Sbjct 1276 GATTGCAAAGTACCATCGCATACTGATTTATCGTATGATGATTACAAGAAACTTCACCCT 1335
Query 180 GACCCTCTAATTGATGACTTGAAGCTAAAGTTTCTGGCAATGGACAAAAAGTGGCGTCAG 239
||||||||| |||||||||||||||| |||| ||| |||| ||||||| |||||||||
Sbjct 1336 GACCCTCTAGTTGATGACTTGAAGCTCAAGTCTCTCGCAAACGACAAAATGTGGCGTCAA 1395
Query 240 TGTGT-AAAGTGTAAGAACATGATTGAACTTTCTTATGGCTGCAACCACATGACTTGCAG 298
||||| ||| |||| | | ||||||||||||||| ||||||| |||||||||||||||||
Sbjct 1396 TGTGTCAAA-TGTAGGCATATGATTGAACTTTCTCATGGCTGTAACCACATGACTTGCAG 1454
Query 299 ATGTGGATATCAGTTTTGCT-TCCAATGTGGGATTGAATGGAAGAA 343
|||||| ||| ||||||||| | ||||||||||||||||| ||||
Sbjct 1455 ATGTGGTTATGAGTTTTGCTATG-AATGTGGGATTGAATGGCAGAA 1499
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23559814943
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5