BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932692
Length=1096
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25390.1 | Symbols: | pseudogene, hypothetical protein | ch... 619 1e-176
> AT2G25390.1 | Symbols: | pseudogene, hypothetical protein |
chr2:10812615-10813217 REVERSE LENGTH=603
Length=603
Score = 619 bits (335), Expect = 1e-176
Identities = 519/605 (86%), Gaps = 24/605 (4%)
Strand=Plus/Plus
Query 495 ATGATTTGGCGAATGATCCAATGTTCCAAACCTTTTCGTCCAGTGTTTGATGGTGGGATT 554
|||||||||||| || ||||||||| ||||||| ||||||| || ||||| | |||||||
Sbjct 1 ATGATTTGGCGATTGCTCCAATGTTGCAAACCTCTTCGTCCTGTATTTGACGCTGGGATT 60
Query 555 TGCATCAATGGTTG-TTTGTGTTATTTTGGTAAGCTCAATTGCGATCGAGAGGATGTTGT 613
||||||||||| || ||||| |||| | |||||||||||||||||| | |||||| ||||
Sbjct 61 TGCATCAATGG-TGTTTTGTATTATCTCGGTAAGCTCAATTGCGATAGGGAGGATTTTGT 119
Query 614 TATAGTTTGTTTTGATGTTAGGAATGAGAAGTTGAGCTTTATCGACAAACCGAAGGGCAT 673
|||||||||||||||||| | | ||||||||||||||||||| | || | ||||
Sbjct 120 TATAGTTTGTTTTGATGTCAAGTCCGAGAAGTTGAGCTTTATCGGCGAA-C--TTGGCA- 175
Query 674 GA-TAG-T-T-AAATA-TGAGTCGAGACTGATTAACTACAAGGGTCGGTTGGGTATATTT 728
|| ||| | | ||| | | |||||| |||||||||| | ||||||| |||||||||| |
Sbjct 176 GATTAGATATCAAACACT-AGTCGAAACTGATTAACCAGAAGGGTCAATTGGGTATATGT 234
Query 729 CAGTGTTCAAACTCGGGGTTAATT-ACTCGAAGCAGTAAAAGTTTTGATTTGTTGATTCT 787
|||||||||||||||||| |||| | | ||| |||||||||||||||||||| ||||||
Sbjct 235 CAGTGTTCAAACTCGGGGAAAATTGA-TTGAACCAGTAAAAGTTTTGATTTGTGGATTCT 293
Query 788 TGAGGATGTCAAGAAAAATGGATGGACGAAGCGTAGCTATGTATTGCCTTTTGTGTGGAG 847
||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||| |
Sbjct 294 TGAGGATGTCAAGAAAAATACATGGACGAAGCGTATCTATGTATTGCCTTTTATGTGGTG 353
Query 848 CAATATGGTTGAATATACTACTAAGCTGCGTATTGTTGGAATGAATGGTACAT-GTGAAA 906
||||| |||| || || ||| |||| ||||||||||||| |||||| | ||||||
Sbjct 354 GAATATCGTTG---CGACCACCAAGTTGCGCATTGTTGGAATGATTGGTAC-TAGTGAAA 409
Query 907 TTGTGTTGTCGCCGTATGGTTTATCTGACCGGCCTTATTATCTTTTCTACTACAATCTCG 966
|||||||||||||||||| | ||||||| | ||||||||||||||||||||||||||||
Sbjct 410 TTGTGTTGTCGCCGTATGATCTATCTGA-C--CCTTATTATCTTTTCTACTACAATCTCG 466
Query 967 AGATGAATAGTGTTAGGAAAGTTGAAATCCAAGGACTTGGAGCGTTTAAGACCAGTACAG 1026
||| ||| | ||||||| |||||| |||||||||||||||||||||| |||| |||||||
Sbjct 467 AGACGAACAATGTTAGGGAAGTTGGAATCCAAGGACTTGGAGCGTTTGAGACTAGTACAG 526
Query 1027 TAGCTCACTTATTCGTAGATTACGTAGAAGATGTGAAGTTTATATAAGTGTTT-AAGATT 1085
||| ||||||||| |||||||||| ||||||||||||||| |||| ||||||| ||||||
Sbjct 527 TAGTTCACTTATTTGTAGATTACGAAGAAGATGTGAAGTT-ATATGAGTGTTTGAAGATT 585
Query 1086 TGGCT 1090
|||||
Sbjct 586 TGGCT 590
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53714583150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5