BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932693
Length=2291
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25420.1 | Symbols: | transducin family protein / WD-40 rep... 3057 0.0
> AT2G25420.1 | Symbols: | transducin family protein / WD-40 repeat
family protein | chr2:10816749-10821053 FORWARD LENGTH=2625
Length=2625
Score = 3057 bits (1655), Expect = 0.0
Identities = 2067/2263 (91%), Gaps = 39/2263 (2%)
Strand=Plus/Plus
Query 17 AACGATGATCTTAGACGAGAAAAATCGGAAAAATCTCGTATTCCTAATCTTACAGTTCTT 76
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 265 AACGATGATCTTAGACGAGAAGAATCGGAAAAATCTCGTATTCCTCATCTTACAGTTCTT 324
Query 77 TGATGAAGAAGGCTACGAAGAAAGCTTACACTTATTGGAGCAGGATTCAAGAGTTTTCTT 136
||||||||| |||||||||||||||||||||||||||||||| |||||| | ||||||||
Sbjct 325 TGATGAAGAGGGCTACGAAGAAAGCTTACACTTATTGGAGCAAGATTCAGGTGTTTTCTT 384
Query 137 CGATTTTAGTTA-CTTCTCCAATGCAATCCTCAATGGTAACTTCAAAGAAGCAGATGACT 195
||||||||| || ||| || ||||||||||| |||||||||| ||||| ||||||||||
Sbjct 385 CGATTTTAGCTACCTT-TCTAATGCAATCCTTAATGGTAACTGGAAAGACGCAGATGACT 443
Query 196 ATCTTTTAGCATTCACTCGTCCAGAAGCAAATACATATTCAAGGAAGATGTTCTTTGACT 255
|||| | |||||||||| ||||||| |||||||| | |||||||||||||||||||| ||
Sbjct 444 ATCTCTCAGCATTCACTAGTCCAGAGGCAAATACTTTTTCAAGGAAGATGTTCTTTGGCT 503
Query 256 TGTTCAAGCGGAAATTATCCGAAGCACCGGATAGGAGTGGTGGCTCTGAAGCTGTGAACA 315
|||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 504 TGTTCAAGTTGAAATTTTCCGAAGCACCGGATAGAAGTGGTGGCTCTGAAGCTGTGAAGA 563
Query 316 TATTCTCTAAGGATTTGAGACGGATTCCTGTTTTAAAAGATGATAGCTTCGACGATTTGG 375
||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 564 TATTCTCCAAGGATTTGAGACGGATTCCTGTTTTAAAAGATGATAGCTTTGATGATTTGG 623
Query 376 TTGAGGTGATTGCTGTAGATGATATGAGGCAAGGGATT-TTGGAGGGA-ACTTGTTGTGT 433
|||| |||||||||||||||||||||| | | ||| | || ||| |||||||||||
Sbjct 624 TTGAAGTGATTGCTGTAGATGATATGA-G--A---ATTCCT-GA-GGAGACTTGTTGTGT 675
Query 434 GGACAAAGCACCGGGAAGAGCTAAATTGTGTGTTGATCTCCATAAACTAGCTGAAAGCAA 493
||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct 676 GGACAAAGCACCGGGAAGAGCCAAATTGTGTGTTGATCTTCATAAACTAGCAGAAAGCAA 735
Query 494 TCCTTGTTTATGTGACAAACTAGAATTTCCGAGCTTGAATAAATCTGCATTGCTGTCACT 553
||||| |||| ||| |||||| || ||||| || ||||||||||||||||||||| | ||
Sbjct 736 TCCTTCTTTACGTGGCAAACTTGATTTTCCAAGTTTGAATAAATCTGCATTGCTGGCTCT 795
Query 554 TATCTCCCTTATTTGTCCAAATTGTAGTGGGAGAAACGGAGGTTTGAAGGAAGATCTCAT 613
||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 796 TATCTCCCTCCTTTGTCCAAATTGTAGTAGGAGAAAGGGAGGTTTGAAGGAAGATCTCAT 855
Query 614 TTGCTTAATCCTTCAATTTCTCTATGAAGCCAAGTACAAGAACACTCTGCATAAGTTAGA 673
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 856 TTGCTTAATCCTTCAATTTCTCTATGAAGCGAAGTACAAGAACACTCTGCATAAACTAGA 915
Query 674 GCAAGAAACAAAAGTCTTCTTCAACTTAAATTATCTGGCGGAAGTGATGAAACTCGGTGA 733
||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 916 GCAAGAAACAAAAGTGTTCTTCAACTTAAATTATCTGGCGGAAGTGATGAAGCTTGGTGA 975
Query 734 ATATGGCAAAGCTGAAGAGTACCTGGGAGCTTTTACAGACTCAAAAGATAACAAGTACTC 793
|||||| |||||||||||||| ||||||||||||||| ||| ||||||| ||||||||
Sbjct 976 ATATGGTAAAGCTGAAGAGTATCTGGGAGCTTTTACAAACTGGGAAGATAATAAGTACTC 1035
Query 794 AAAGGCTATGTTTCTTGAAATCCAGAAACTTACATGCCTACAATCTACAGAATGGGAGGT 853
||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||
Sbjct 1036 AAAGGCTATGTTTCTTGAACTTCAGAAACTTATATGCCTACAATCTACAGAATGGGAGGT 1095
Query 854 TGCAACCCCATCTGGATCTCTTGATAACATGTCGCCGAAGATAAAGCTACATGCCTCTGT 913
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 1096 TGCAACCCCATCTGGATCTCTTGATAACATGTCGCTGAAGATAAAGCTGCATGCCTCTGT 1155
Query 914 TGCCATGCTAGCGAAGAAGAATCCCGTACTGAAAGATAAACTCAAGTTTCCTAGCATGGA 973
|||||||||||| ||||||||||| |||||||||||| |||||||||||||||| |||||
Sbjct 1156 TGCCATGCTAGCCAAGAAGAATCCAGTACTGAAAGATGAACTCAAGTTTCCTAGTATGGA 1215
Query 974 AAAGTCAAGACTTTTAACACTGATGAAGCAGACTATGGACTGGTGGACTTCTCGTACATG 1033
|||||||||||||||||||||| ||||||||||||||||||||| | | |||||
Sbjct 1216 AAAGTCAAGACTTTTAACACTGGTGAAGCAGACTATGGACTGGT-G-------G-ACATG 1266
Query 1034 CAACAATTCTAGTTCTCTGGAAAATGTTCCAGTAGTGTCATACCTTTGTGGCACACCATT 1093
||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1267 CAACAATACTAGTTCTCTGGAAAATGTTCCAGTAGTGTCATATCTTTGTGGCACACCA-T 1325
Query 1094 C-TCTTTGaaaaaaaaaTTCAATAAAACAGGGCAAAGGAAGAAGGTTGTTAACTACAAAC 1152
| ||| ||||| ||||| ||||||| | ||||||||| | ||||
Sbjct 1326 CTTCTATGAAATTTTTTTTCAAGAAAACAGTACCAAGGAAGAA----G--------AAAC 1373
Query 1153 CAAACGAAATCAATGATCCATCTCAGTGCAATGCACTCGTTCTTCCTGATTATTTCTCAG 1212
||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1374 CAAACGAAATCAAAGATCCTTCTCAGTGCAATGCACTCGTTCTTCCTGATTGTTTCTCAG 1433
Query 1213 AAGAGATGATTGCACGTTTGACCTATTCCCCTTCTGGAGATTATATACTGGCTTTGGCAG 1272
|||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1434 AAGAAAAGATTGCACGTTTGACCTATTCCCCTTCTGGAGATTACATACTGGCTTTGGCAG 1493
Query 1273 AAGACGCCACACATAAACTCTGGACGTGGTCGAGTAGCCAAAATGAATTCTCCAAGGAAA 1332
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1494 AAGACGCCACACATAAACTCTGGACATGGTCGAGTAGCCAAAATGAATTCTGCAAGGAAA 1553
Query 1333 ATGTATTTCCGAAGCCACGATTACATCAACCTCAAAGTGGGAAAACTATGAAAAACGAGA 1392
|||||| ||| ||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1554 ATGTATATCCAAAGCCACGATTACATCAACCTCAAAGTGGGAAAACTATGGAAAATGAGA 1613
Query 1393 TGGCCGCCTCTGTTCAGAATTCAACGTCATGTTTCGCTATCAAGGGTTCCTATCTTTTCT 1452
||||| ||||||||||||| |||||||||||||| || |||||||||||||||||||||
Sbjct 1614 TGGCCACCTCTGTTCAGAAGTCAACGTCATGTTTTGCGGTCAAGGGTTCCTATCTTTTCT 1673
Query 1453 CTACTTCAGGAGGAAAAATAGCAGTTTTTGATGTAAAGAGTTTTGAGAAGGTAGCTGCTT 1512
| |||||||||||||| ||||||||||||||| |||||| |||||||||||||||| |||
Sbjct 1674 CGACTTCAGGAGGAAAGATAGCAGTTTTTGATCTAAAGAATTTTGAGAAGGTAGCTTCTT 1733
Query 1513 TTGGAAGTCCTACACCTATGGCTACGTATTTTATATTTATTCCTGGTGATTTGCTTGCTG 1572
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1734 TTGGAAGTCCTACACCTATGGCTACGTATTTTATATTTATTCCTGGTGATTTGCTTGCCG 1793
Query 1573 TCGGGCTGGATGATGGTTCTATCTTTATCCATTGTTTATCTTCGAGAAAGGTCAAAGAAA 1632
||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1794 TCGGGCTAGATGATGGCTCTATCTTTATCCATTGTTTATCCTCGAGAAAGGTCAAAGAAA 1853
Query 1633 AGCTGGAGGGGCATGATCAGAAAATAACCTGCTTAGCATTTTCCCGCTGTTTTAATGTCC 1692
|| ||||||| || || ||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 1854 AGTTGGAGGGCCACGACCAGAAAATAACCTGCCTAGCATTTTCTCGCTGTTTTAATGTCC 1913
Query 1693 TTGTCTCATCTGACTCTGATGGAAAGCTCTGTCTTTGGAGCACAAATAGTTGGGTTAAGC 1752
| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1914 TCGTCTCATCTGACTCTGATGGAAAGCTCTGTCTTTGGAGCACAAAGAGCTGGGTTAAGC 1973
Query 1753 TAACAAGTAAGAACTCTATGCGTAAGTTTTGCACCCGGTTTAATCATGAGTCCACCTCTT 1812
|||||||||||||||||| |||||| ||||||| ||||| ||| | ||| ||||||||||
Sbjct 1974 TAACAAGTAAGAACTCTACGCGTAAATTTTGCAACCGGTCTAACCTTGAATCCACCTCTT 2033
Query 1813 TAGTAACTCACATCCAGTTTGACCCATATCAAATTGAGCTACTTGTGGTCCATGA-GGGT 1871
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 2034 TAGTAACTCACATCCAGTTTGACCCATATCAAATTGAGCTACTCGTGGTCCATGATGGGT 2093
Query 1872 TGGATAGG-TGTATACGAAGCTCAAACTCTTGATTGCCGTTTGCAGTGGGTACCCGATGA 1930
||||||| | ||||||||| || ||||||||||||||||||||||||| |||||||||
Sbjct 2094 -GGATAGGAT-TATACGAAGTTCGAACTCTTGATTGCCGTTTGCAGTGGATACCCGATGC 2151
Query 1931 ATCTGATACTTCAATAACTTCCGCTACATATTCTTCCGATGGTGAGATCATCTATGCTGG 1990
||||||| || |||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 2152 ATCTGATCCTGCAATAACTTCTGCTACATATTCTTCCGATGGTGAGATCATCTATGTTGG 2211
Query 1991 CTTTAGAAGTGGATTTATAAAAATTGTGGACTCCAGGACCTTCATGACGGTATGTCGAAT 2050
|||||| |||||| ||| |||||||||||||||| ||| || ||||| |||||| |||
Sbjct 2212 ATTTAGATGTGGATCTATTAAAATTGTGGACTCCAAGACTTTTATGACACTATGTCAAAT 2271
Query 2051 CAATATGACTTCTCTTACTCAACCCAGCCCCAACAACATCAGGCTCGAGGTTTATCCGAC 2110
|||| |||||||| ||||||||| |||| ||| ||||||||| |||||||||||||||||
Sbjct 2272 CAATCTGACTTCTTTTACTCAACTCAGCACCAGCAACATCAGTCTCGAGGTTTATCCGAC 2331
Query 2111 TGTTGTTGCCGCTCATCCTTCACATCCGAGTCAGATCTCTGCTGGACTCAGTAATGGTAA 2170
||||||||||||||||||||||||||| | |||||| || ||||| || |||||||||||
Sbjct 2332 TGTTGTTGCCGCTCATCCTTCACATCCTAATCAGATATCGGCTGGGCTTAGTAATGGTAA 2391
Query 2171 GGTCATCGTCCTTCAGCCATTGTGGAGTGGAGGATGGGGTGAAGCAGCTCCACTTGAAGA 2230
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2392 GGTCATTGTCCTTCAGCCGTTGTGGAGTGGAGGATGGGGTGAAGCAGCTCCACTTGAAGA 2451
Query 2231 CAATGGAGGTTATTCTAATGACTCAGATCATAGTTACTGACCA 2273
|||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2452 CAATGGAGATTATTCTAATGACTCAGATCATAGTTACTGACCA 2494
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113704234425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5