BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932698

Length=505
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G25482.1 | Symbols:  | Protein of unknown function (DUF784) ...   593    4e-169


> AT2G25482.1 | Symbols:  | Protein of unknown function (DUF784) 
| chr2:10845884-10846348 REVERSE LENGTH=465
Length=465

 Score =  593 bits (321),  Expect = 4e-169
 Identities = 419/467 (90%), Gaps = 4/467 (1%)
 Strand=Plus/Plus

Query  21   ATGGAGAATAAAACCATTCTCATGACAtttttttCAGTTATGGTTTTGCTATCATTTTTT  80
            ||||| |||||||||||| || || |||| |||||| | |||||||||||||||| ||||
Sbjct  1    ATGGAAAATAAAACCATTTTCTTGGCATTGTTTTCAATCATGGTTTTGCTATCATATTTT  60

Query  81   AATCAAAGTTTGGCCATAGCAGCCGATCTTGAAGAAATGCTAATCAACGAGTTTGATGTG  140
            |||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct  61   AATCCAAGTTTGGCCATAGCAGCCGATCTTGAGGAGATGCTAATCAACGAGTTTGATGTG  120

Query  141  GTGCTTAAACATTGGCCGAGTCCAGGTGATTATAATCTCAACGTTATACGTGGACAATCA  200
            |||||||||||||||||||| || ||||||||||||||||| ||||| ||||||||| ||
Sbjct  121  GTGCTTAAACATTGGCCGAGCCCGGGTGATTATAATCTCAATGTTATCCGTGGACAACCA  180

Query  201  AGAAAACATCTCAAATATCTTCTTAACTGCGGTGTAAAAATGGGACCTGGTGGGACTGAA  260
            |||||||||||||||||||||||| | ||||  |||||||||||| ||||||| | ||||
Sbjct  181  AGAAAACATCTCAAATATCTTCTTGATTGCGCAGTAAAAATGGGAGCTGGTGGAAATGAA  240

Query  261  TGTAACATTGAATATA-GAGACGGAATTTCTCGGAACAAAAGTACTTCGAGAGATTGTTG  319
            |||||||||||| ||| |||||| | |||||||||||||||||  ||||| |||||||||
Sbjct  241  TGTAACATTGAA-ATAAGAGACGTATTTTCTCGGAACAAAAGTTTTTCGAAAGATTGTTG  299

Query  320  TCTGATGATAGTGAAAGCTGGCAAGCAA-TGCCACACAGAATTGATGAAGTTGTTTTTGC  378
            || | || ||||||||| ||||| | || ||| ||||||||| ||||||  ||||||| |
Sbjct  300  TCGGGTGCTAGTGAAAGGTGGCA-GAAAATGCTACACAGAATGGATGAAAATGTTTTTTC  358

Query  379  AATTCTATCAACTCAAACGTTTTAGTTCTAAAGCTATGATCAAAACTAACGAAATATGGA  438
            |||||||||||||||| |||||||||||||| || ||||||||||||||||||| |||||
Sbjct  359  AATTCTATCAACTCAACCGTTTTAGTTCTAACGCGATGATCAAAACTAACGAAACATGGA  418

Query  439  ACAAATGTTCTAATGAAACTGAAGCTATTTCACCATTTTCTGGTTAA  485
            ||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct  419  ACAAATGTTCTAATGGAACTGAATCTATTTCACCATTTTCTGGTTAA  465



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24112390560


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5