BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932702
Length=661
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66550.1 | Symbols: | Maf-like protein | chr5:26559584-2656... 839 0.0
AT2G25500.1 | Symbols: | Inosine triphosphate pyrophosphatase ... 449 1e-125
> AT5G66550.1 | Symbols: | Maf-like protein | chr5:26559584-26561216
REVERSE LENGTH=846
Length=846
Score = 839 bits (454), Expect = 0.0
Identities = 574/632 (91%), Gaps = 8/632 (1%)
Strand=Plus/Plus
Query 36 ATGGAGAAAGGATTTAAGCTGATTCTTGGTTCTCAGTCGATGGCGAGAACGCA-GATTCT 94
||||||| |||||||||||||||||| |||||||| || |||||||||| | | |||| |
Sbjct 70 ATGGAGAGAGGATTTAAGCTGATTCTGGGTTCTCAATCCATGGCGAGAAAG-AGGATTTT 128
Query 95 GGCTGAAATGGGCTATGATTTCACTATTGTGACTGCAGATATTGATGAGAAAGCTATTAG 154
|||||||||||| ||||||| |||||| ||||||||||| ||||||||||||||||||||
Sbjct 129 GGCTGAAATGGGATATGATTACACTATCGTGACTGCAGACATTGATGAGAAAGCTATTAG 188
Query 155 GAAAGAGAAGCCTGAAGATTTGGTTGTGGCTATTGCTGAAGCCAAAGCAAATGAGATTAT 214
|| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 189 GACAGAGAAGCCTGAAGATTTGGTTGTGGCTCTTGCTGAAGCCAAGGCAAATGAGATTAT 248
Query 215 ATTGAAATTGGGAGGTGAAAGTCAGTTTGCACAAGATTCTCAACCAACTCTATTGATTAC 274
|| ||||||||||||||| || ||||||||| ||||| ||||||||||||| ||||||||
Sbjct 249 ATCGAAATTGGGAGGTGAGAGCCAGTTTGCAAAAGATCCTCAACCAACTCTTTTGATTAC 308
Query 275 TTCAGACACTGTTGTTGTGTACAAAGGTGTCATCAGAGAAAAACCAACCAGTAAAGAAGA 334
| |||||||||||||||||||||||||||| || |||||||||||||||| |||||||||
Sbjct 309 TGCAGACACTGTTGTTGTGTACAAAGGTGTTATTAGAGAAAAACCAACCACTAAAGAAGA 368
Query 335 AGCTCGCGAGTTTATCAAAGGCTATTCCGGGTCACATGGGGGCGTTGTGGGATCTGTTCT 394
|||||| || |||||||||||||||||||| ||||| || || |||||||||||||||||
Sbjct 369 AGCTCGTGAATTTATCAAAGGCTATTCCGGTTCACACGGAGGAGTTGTGGGATCTGTTCT 428
Query 395 TGTGAGAAACTTGAAAACTGGAGTTAGAAGAGTAGGATGGGACAAAGCAGAGGTTTATTT 454
||| |||||||||||||||||||||| || || ||||||||||||||| |||||||||||
Sbjct 429 TGTTAGAAACTTGAAAACTGGAGTTAAAAAAGGAGGATGGGACAAAGCTGAGGTTTATTT 488
Query 455 CCATGAGATACCAGAACATGTCATCGACGATCTTATTGATGATGCAATAACTT-TCAAGG 513
|||||||||||||||||| ||||| |||| ||||||||||||||||||||||| | ||||
Sbjct 489 CCATGAGATACCAGAACAAGTCATTGACGGTCTTATTGATGATGCAATAACTTAT-AAGG 547
Query 514 TTGCTGGAGGTTTAATGCTTGAGCATCCCCTCATTTCACCTTTTATCGATTCCGTGGTGG 573
||||||||||||||| || |||||||||||||||||||| ||||||||||| |||||||
Sbjct 548 TTGCTGGAGGTTTAACACTGGAGCATCCCCTCATTTCACCCTTTATCGATTCTGTGGTGG 607
Query 574 GAGGTGTTGATACAGTCATGGGGCTTTCTAAAGAACTCACTGAAAAATTCATTAACGATG 633
|||| ||||||||||||||||| ||| ||||||||||||| ||||||||||| |||||||
Sbjct 608 GAGGGGTTGATACAGTCATGGGACTTCCTAAAGAACTCACAGAAAAATTCATAAACGATG 667
Query 634 T-TT-T-GTAGCTCAAGAGG-TTTTTGATTAT 661
| || | |||||||||| |||||||||||
Sbjct 668 TGTTGTTGTAGCTCAAGTCCCTTTTTGATTAT 699
> AT2G25500.1 | Symbols: | Inosine triphosphate pyrophosphatase
family protein | chr2:10854652-10854948 REVERSE LENGTH=297
Length=297
Score = 449 bits (243), Expect = 1e-125
Identities = 277/294 (94%), Gaps = 0/294 (0%)
Strand=Plus/Plus
Query 21 ATGGCAAAGAAGACGATGGAGAAAGGATTTAAGCTGATTCTTGGTTCTCAGTCGATGGCG 80
|||||||||||| |||||||||| |||| |||||||||||| ||||||||||||||||||
Sbjct 1 ATGGCAAAGAAGGCGATGGAGAACGGATATAAGCTGATTCTAGGTTCTCAGTCGATGGCG 60
Query 81 AGAACGCAGATTCTGGCTGAAATGGGCTATGATTTCACTATTGTGACTGCAGATATTGAT 140
|||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 61 AGAAAGCAGATTCTGGCTGAAATGGGATATGATTTCACTATTGTAACTGCAGATATTGAT 120
Query 141 GAGAAAGCTATTAGGAAAGAGAAGCCTGAAGATTTGGTTGTGGCTATTGCTGAAGCCAAA 200
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 121 GAGAAAGCTATTAGGAAAGAGAAGCCTGAAGATTTGGTTGTGACTATTGCTGAAGCAAAA 180
Query 201 GCAAATGAGATTATATTGAAATTGGGAGGTGAAAGTCAGTTTGCACAAGATTCTCAACCA 260
||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||
Sbjct 181 GCAAATGAGATTATATTGAAATTAGGAGGTGAAAACCAGTTTACACAAGATTCTCAACCA 240
Query 261 ACTCTATTGATTACTTCAGACACTGTTGTTGTGTACAAAGGTGTCATCAGAGAA 314
||||||||||||||| |||| ||||||||||||||||||||||| || ||||||
Sbjct 241 ACTCTATTGATTACTGCAGATACTGTTGTTGTGTACAAAGGTGTTATTAGAGAA 294
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31948917492
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5