BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932706
Length=1251
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32400.1 | Symbols: EMB104, SHS1, EMB42, ATBT1 | Mitochondri... 926 0.0
> AT4G32400.1 | Symbols: EMB104, SHS1, EMB42, ATBT1 | Mitochondrial
substrate carrier family protein | chr4:15638625-15640465
FORWARD LENGTH=1467
Length=1467
Score = 926 bits (501), Expect = 0.0
Identities = 979/1206 (81%), Gaps = 47/1206 (4%)
Strand=Plus/Plus
Query 21 TCATGGGCAAGACTGGAATCCAATTGTTCGATGATACAAGGAATGGTTTTTTCTCTGTAT 80
||||||| || || ||||||||||||||||| ||| | |||||||| |||||||| || |
Sbjct 60 TCATGGGGAAAACCGGAATCCAATTGTTCGACGATTCGAGGAATGGGTTTTTCTCCGTTT 119
Query 81 CCGATTTGGGATCCGATTGGAGCAGCCTACAGAACCCAAACTACCGGCCAGTTGGTGGAT 140
||||||| |||| ||||| | |||||| | | | | || |||| ||| ||||||| |
Sbjct 120 CCGATTTAGGATTCGATT--CG-AGCCTAAACAGCTCTAATTACCACCCAATTGGTGGGT 176
Query 141 TGTTTGCGAGTGTTAATCAATTAGGAACTGGATTCGGGTCAGGACTTGGGTCCGGATCTA 200
| || || || ||||||| | | ||| | || | | | | || |||
Sbjct 177 TATTCGCCAGCGTTAATC----A-G-ACT--AATC----C---A--T---T-CGCATCCC 215
Query 201 TTTCGT-CTCCGGATCCTCCCAACAGAGATAACAACAGTAGCTTCACTGCTCAGCTTAAT 259
| |||| || |||||| | ||||||||| |||||| |||||| || | ||||| |||
Sbjct 216 TCTCGTCCT-CGGATCTTTCCAACAGAGGCAACAAC---AGCTTCTCTACCCAGCTCAAT 271
Query 260 GATCTCTGCACAAAGTATTTACCTTTTAAAGATGAGGAGGAGGAAGAAGTGATTGGTGAG 319
||||||| ||| |||||| | || ||||| |||||||| |||| ||| | ||| |||
Sbjct 272 GATCTCTACACCAAGTATATGCCGGGAAAAGAGGAGGAGGAAGAAGTAGTTAATGGCGAG 331
Query 320 AA-ACGGAAGAAGAAGAAGAATGGAGGGTTGAAACTGAAGCTTAAGATTTCTAATCCTTC 378
|| | |||||| ||||||||| || ||| | | ||||||| ||||||| ||||||||||
Sbjct 332 AAGA-GGAAGAGGAAGAAGAAAGGTGGGCTCACACTGAAGATTAAGATCGCTAATCCTTC 390
Query 379 GTTGAGGCGGTTATTAAGTGGAGCTGTGGCTGGAGCGATTTCGAGAACGGCGGTGGCTCC 438
|||| ||||| ||||||| ||||| || ||||||||| | |||||||||| ||| || ||
Sbjct 391 GTTGCGGCGGCTATTAAGCGGAGCAGTAGCTGGAGCGGTGTCGAGAACGGTGGTTGCGCC 450
Query 439 TTTGGAAACTATTAGGACTCATTTAATGGTGGGAAGTGGTGGCGACTCCACCACTGAAGT 498
||||| || || ||||| ||| |||||||||||||||| || |||||| |||||||||
Sbjct 451 GTTGGAGACAATCAGGACGCATCTAATGGTGGGAAGTGGAGGAAACTCCAGCACTGAAGT 510
Query 499 CTTTC-GTGATATCATGAAGCAAGAAGGATGGAAAGGTCTCTTCAGGGGCAATTTGGTCA 557
||| |||||||||||||||| ||||| |||| |||||||||||||||||||||||||
Sbjct 511 -GTTCAGTGATATCATGAAGCATGAAGGTTGGACTGGTCTCTTCAGGGGCAATTTGGTCA 569
Query 558 ATGTGATTCGTGTAGCACCCGCTCGTGCCGTTGAGCTTTTTGTATTCGAGACAGTTAACA 617
|||| |||||||| ||||| ||||| ||||| |||||||||||||||||||| || ||||
Sbjct 570 ATGTCATTCGTGTTGCACCTGCTCGAGCCGTCGAGCTTTTTGTATTCGAGACCGTAAACA 629
Query 618 AGAACTTGACTCCAA-AGCTTGGTGAACAGTCAAAAATCCCCATTCCAGCTTCATTGCTT 676
|||| ||| | || | | ||| || | || |||||||| ||||||||||| || ||
Sbjct 630 AGAAATTGTCGCCGCCA-CATGGACAAGAATCGAAAATCCCAATTCCAGCTTCTTTACTG 688
Query 677 GCGGGTGCCTGTGCTGGGGTTAGCCAGACCCTCTTGACATACCCCCTTGAACTAGTCAAG 736
|| |||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||
Sbjct 689 GCTGGTGCCTGTGCTGGAGTTAGCCAGACACTCTTGACATACCCTCTTGAACTAGTCAAG 748
Query 737 ACCCGCCTTACAATTCAGAGAGGTGTATACAA-GGGAATAGTGGATGCTTTTGTCAAAAT 795
|| ||||||||||||||||||||||| ||||| |||| | || |||| ||| |||||||
Sbjct 749 ACTCGCCTTACAATTCAGAGAGGTGTTTACAAAGGGATTTTTG-ATGCGTTTCTCAAAAT 807
Query 796 AATAAGGGAGGAAGGACCGACTGAACTTTACAGGGGTCTGGCCCCGAGCCTTATAGGAGT 855
||| | ||||||||||| || ||||| ||||||||||| || || |||||||| |||||
Sbjct 808 CATACGCGAGGAAGGACCCACAGAACTCTACAGGGGTCTTGCTCCTAGCCTTATTGGAGT 867
Query 856 GGTTCCATATGCAGCAACAAACTACTTCGCCTATGACTCCTTAAGAAAAGCTTACCGTAA 915
|||||||| ||||| ||||| ||||| || ||||| || || |||||||| ||||| |
Sbjct 868 TGTTCCATACGCAGCTACAAATTACTTTGCATATGATTCTTTGAGAAAAGCATACCGGA- 926
Query 916 GCTGGTGAA-GCAAGAGA-GCATTGGGAATATCGAGACTCTTTTGATAGGTTCTTTAGCT 973
| | | || ||| |||| | ||||| || || ||||||||||||||||||||||||||
Sbjct 927 GTTTTTCAAAGCAGGAGAAG-ATTGGAAACATTGAGACTCTTTTGATAGGTTCTTTAGCA 985
Query 974 GGTGCGTTATCAAGTACTGCAACTTTCCC-CTTGGAGGTTGCTCGGAAGCATATGCAGGT 1032
||||| |||| || |||||||||||||| |||| || | || |||||||||||||||||
Sbjct 986 GGTGCACTATCGAGCACTGCAACTTTCCCTCTTGAAG-TGGCCCGGAAGCATATGCAGGT 1044
Query 1033 GGGAGCAGTCGGTGGGAGGGTGGTTTACAAGAATATGTTGCATGCTTTGATC-CGCATAC 1091
|||||| || | |||||||| || |||||||| |||||||| ||| || | | |||||
Sbjct 1045 GGGAGCTGTTAGCGGGAGGGTTGTGTACAAGAACATGTTGCACGCTCTGGTGAC-CATAC 1103
Query 1092 TCGAGCAAGAAGGTGTTG-CAGGTTGGTATAGAGGGCTTGGACCGAGTTGCCTGAAGTTG 1150
| ||||| |||||| || | |||||||| | ||||||||||||||||||| ||||||||
Sbjct 1104 TTGAGCATGAAGGTATTCTC-GGTTGGTACAAAGGGCTTGGACCGAGTTGCTTGAAGTTG 1162
Query 1151 GTTCCTGCAGCTGGAATCTCCTTCATGTGTTACGAAGCGTGCAAGAAGATACTCGTTGAG 1210
|||||||| ||||||||||||||||||||||| ||||| ||||||||||||||| | |||
Sbjct 1163 GTTCCTGCTGCTGGAATCTCCTTCATGTGTTATGAAGCTTGCAAGAAGATACTCATCGAG 1222
Query 1211 AACAAC 1216
||||||
Sbjct 1223 AACAAC 1228
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61495667625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5