BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932709

Length=685
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G25565.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   547    4e-155


> AT2G25565.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: Zinc finger, C3HC4 type (RING finger) family protein 
(TAIR:AT2G24480.1); Has 27 Blast hits to 27 proteins in 3 
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants 
- 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI 
BLink). | chr2:10884062-10885295 REVERSE LENGTH=621
Length=621

 Score =  547 bits (296),  Expect = 4e-155
 Identities = 435/501 (87%), Gaps = 14/501 (3%)
 Strand=Plus/Plus

Query  21   ATGGAGACTGGAGATTTGAAAATCGATATCACTACGAAGACGTACAGTCAAACTCAAACC  80
            ||||||||||||||| ||||| ||| ||||||||||||||  |  | ||  | |||||||
Sbjct  1    ATGGAGACTGGAGATATGAAATTCGCTATCACTACGAAGA--T--ATTC--AGTCAAACC  54

Query  81   TCATCTTTACCCCTGAGCCT---CAACATTGTTTG---CATCAATCTCTGTCAACAATTC  134
             ||| ||||||| |||||||   ||||| ||||||   |||||||||| |||||||||||
Sbjct  55   ACATATTTACCCTTGAGCCTAAACAACACTGTTTGCATCATCAATCTCCGTCAACAATTC  114

Query  135  GAGAGGTTTGTGATTGACAAATCCGATGGAAGCGTCACCTTTACTGGATTTTATCCAGCA  194
             |||| | |||||||||||||||| |||||||  |||| |||| |||||| ||||||| |
Sbjct  115  AAGAGATATGTGATTGACAAATCCAATGGAAGTATCACTTTTAATGGATTGTATCCAGGA  174

Query  195  CCTTCTCTCCCTATCTCTCAAATTCTTTTGAATCTCTTAAACTACGAGTTCACTACGTTT  254
            ||| ||||||| ||||||||||| | ||||||||||||||||||| | |||||| |||||
Sbjct  175  CCTCCTCTCCCCATCTCTCAAATCCGTTTGAATCTCTTAAACTACAAATTCACTCCGTTT  234

Query  255  CATATCTTTCCGCTTCTCAATTCCCGTCTCCATGATCCTTCCTTGTCCGAATATATCGCT  314
            ||| |||||||||||||  |||| |||||||||||||||||||||||| |||||||||||
Sbjct  235  CATCTCTTTCCGCTTCTTGATTCTCGTCTCCATGATCCTTCCTTGTCCAAATATATCGCT  294

Query  315  GAGGTAATCGCTGCTCGAGCGAGTCTAAGCGTTGGGATTT-TACAACCGTTGTTCATGTC  373
            ||||||||| ||| || ||||||| ||||||||||| ||| |||||| ||||||||||| 
Sbjct  295  GAGGTAATCACTGGTCAAGCGAGTTTAAGCGTTGGG-TTTCTACAACGGTTGTTCATGTT  353

Query  374  CGTTAACGTAGTTTTTACGCAAGAAGTGTTCTCAGTGATTCCTGTTTCTTGTCTTCCCAA  433
            ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  354  CGTTAACGTCGTTTTAACGCAAGAAGTGTTCTCAGTGATTCCTGTTTCTTGTCTTCCTAA  413

Query  434  AGAAGAAACTCAAGAAGAAGAGGACGAATCAACATGTTCGATATGTTTGGAGGATTTTTT  493
            ||||||||||||||||| ||| |||||||| |||||| | |||||||||||| |||||||
Sbjct  414  AGAAGAAACTCAAGAAGTAGAAGACGAATCGACATGTCCTATATGTTTGGAGAATTTTTT  473

Query  494  GAACTATGGCGACAAAGATGA  514
            |||| ||  || ||| |||||
Sbjct  474  GAACGATTACGTCAACGATGA  494



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33154537020


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5