BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932711
Length=1870
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25580.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2632 0.0
> AT2G25580.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:10888014-10890367 FORWARD LENGTH=2194
Length=2194
Score = 2632 bits (1425), Expect = 0.0
Identities = 1748/1899 (92%), Gaps = 42/1899 (2%)
Strand=Plus/Plus
Query 1 CTTTGGTCTCTGCTCTTCTGATGTATACGAAGATATCATTGTTACACAGAAAGAGTTCTT 60
|||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||
Sbjct 69 CTTTGGTCTCTGCTCTTCTGATGTATACGAAGTTATCATTGTTCCCCAGAAAGAGTTCTT 128
Query 61 CA-T--TCTCCATAGCCAACGAGAAAAGAATCCATCAGTTTCTGAAGAATCTCTGCACGG 117
|| | |||||||||||||||||||||| |||||||| ||||||| ||||||||||||||
Sbjct 129 CACTACTCTCCATAGCCAACGAGAAAAGGATCCATCAATTTCTGAGGAATCTCTGCACGG 188
Query 118 CTGTTGAAAGGTTAGATTTTGGAAACTCTAATGATTCGTCACAAATGAACCCTGGAGAAG 177
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 189 CTGTTGAAAGGTTAGATTTTGGAAACTCTAATGATTCGTCAGAAATGAACCCTAGAGAAG 248
Query 178 GGT-TCGATGGAGGAAGCCAGAACCGAACTGGGATCTCTGGGGAAGTTAGTGAAAGTATT 236
||| | ||||| ||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 249 GGTAT-AATGGACGAATCCAGAACCGAACTGGGAGCTCTGGGGAAGTTAGTGAAAGTATT 307
Query 237 CACACACAAAGTCAGAGT-TGGGGTTCGAATCAGGGAAGAAATGAGGAGTCATGGAAGCA 295
|||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||
Sbjct 308 CACACACAAAGTCAGAGTCT-GGGTTCGAATCAGGGAAGAAATGAGCAGTCATGGAAGCA 366
Query 296 GAGTCCTAGTTTGTCTAATTCTCAGGTCCAATCTCAATATCAAGGCAATTGGTATGGGAC 355
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 367 GAGTCCTAGTTTGTCTAATTCTCAAGTCCAATCTCAATATCAAGGCAATTGGTACGGGAC 426
Query 356 AAACCCTGA-T-T----A-----TA--A-----TTGGCATTCAGGTACGACTGTTGATAG 397
|||| |||| | | | || | |||||||||||||| |||| ||||| |
Sbjct 427 AAACTCTGATTATCAGAATGGTGTAGGATCGTCTTGGCATTCAGGTAAGACTATTGATCG 486
Query 398 CGAGGTATATGATATGATTGGGGAATTCGATGAATATTGCATACAAGAGAATGTAAGAGT 457
|||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 487 CGAGGTATATGACATGATTATGGAATTTGATGAATATTGCATACAAGAGAATGTAAGAGT 546
Query 458 GGCCTTAACGACTATGGAAAAATTGGAGAAGAAGGGTTATGTTATGGATTTAGCTAGACT 517
|||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||
Sbjct 547 GGCCTTAACGACTATGGAAAAACTGGAGAAGAAGGGTTATGTTATGGATTTTGTTAGACT 606
Query 518 TTTAAGGTTAACACAGCTATGTATGGAAGAAAATGTTTTTTACGAAGTCAGTGTTTTAGA 577
|||| ||||||||||||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 607 CTTAAAGTTAACACAGCTATGTAGGGAAGGAAATGTTTATTACGAAGTCAGTGTTTTAGA 666
Query 578 AGAAGCCAAGGTTTCTGTTCTTGGGAAGATCAGAGCTTTGGTTAACAACAATTTAGATGC 637
||||||||||||||||||||| | ||||||||||||||| ||| ||||||||||| ||
Sbjct 667 AGAAGCCAAGGTTTCTGTTCTAGCGAAGATCAGAGCTTTAGTT---AACAATTTAGAAGC 723
Query 638 GAATTATTTGATGTATTATACTGACATCATGATTAAGGAATTTGACGAATTTTGTAAGCA 697
||||||||||| |||||||||||||||||||||| |||||| ||| | |||||| || ||
Sbjct 724 GAATTATTTGAAGTATTATACTGACATCATGATTGAGGAATATGATGCATTTTGCAAACA 783
Query 698 AGGTAAGGTGAAAAAGGCATTGTATACTATAGATACATTGGAAAGCATGAATCATGTTGT 757
||||| |||||||| || |||||||||||||||| ||||| ||| |||||| |||||||
Sbjct 784 CGGTAAAGTGAAAAAAGCGTTGTATACTATAGATATATTGGCAAGTATGAATTATGTTGT 843
Query 758 -TATTTTGAGTAGACTTTTACGGTTAGCGAAGCTGTGTGGGGAAGCAGAGGGTTTACAAG 816
| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 844 GGA-TTTGAGTAGACTTTTACGGTTAGCGAAGATTTGTGGGGAAGCAGAGGGTTTACAAG 902
Query 817 AGGCCAAGGTTGTTCATGGGAAGATTAGTTCTTCCGCTAGCCATTTAGATGTGAGTTCTA 876
|||||||| ||||||||||||||||||| |||||| ||||||||||||| |||||||||
Sbjct 903 AGGCCAAGACTGTTCATGGGAAGATTAGTGCTTCCGTTAGCCATTTAGATTTGAGTTCTA 962
Query 877 ACCATATATTGTTAGAAATGTACTCCAACTGTGGGTTGGCGAATGAAGCAGCGAATGTTT 936
||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 963 ACCATGTATTGTTAGAAATGTACTCAAACTGTGGGTTGGCGAATGAAGCAGCGAGTGTTT 1022
Query 937 TTGAGAAAATGCCTGAGAAGAATTTAGAGACTTGGTACATTATAATAAGATGTTTTGCAA 996
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1023 TTGAGAAAATGTCTGAGAAGAATTTAGAGACTTGGTGCATTATAATAAGATGTTTTGCAA 1082
Query 997 AGAATGGTTTTGGGGAAGACGCTATTGATATGTTT-GCTCGATTTAAAAAAGAAGGAAAC 1055
||||||||||||||||||||||||||||||||||| | ||| |||||| ||||||||||
Sbjct 1083 AGAATGGTTTTGGGGAAGACGCTATTGATATGTTTAG-TCGCTTTAAAGAAGAAGGAAAT 1141
Query 1056 AGACCCGATGCCCAACTATTTAGAGGAATTTTCTATGCTTGTGGTATGCTAGGTGATGTT 1115
| ||| |||| ||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1142 ATACCTGATGGTCAATTATTTAGAGGAATATTCTATGCTTGTGGTATGCTAGGTGATGTT 1201
Query 1116 GATGAGGGACTATTGCACTTTGAGTCAATGTCCAGGGACTACGGCATTGCCCCTTCCATT 1175
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1202 GATGAGGGACTATTACACTTTGAGTCAATGTCCAGAGACTACGGCATTGCCCCTTCCATT 1261
Query 1176 GAAGACTATGTAAGCCTCGTTGAGATGTATGCGTTACCCGGATTTTTAGATGAGGCTTTG 1235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 GAAGACTATGTAAGCCTCGTTGAGATGTATGCGTTACCCGGATTTTTAGATGAGGCTTTG 1321
Query 1236 GAATTTGTGGAGAGAATGCCGATGGAGCCAAATGTTGATGTGTGGGAAACATTGATGAAT 1295
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1322 GAATTTGTGGAGAGAATGCCGATGGAGCCAAATGTTGATGTTTGGGAAACATTGATGAAT 1381
Query 1296 CTTTCTCGAGTGCATGGGAATTTAGAACTTGGAGACCGGTGTGCTGAAGTTGTTGAATTG 1355
||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1382 CTTTCTCGAGTTCATGGGAATTTAGAACTTGGAGACTACTGTGCTGAGGTTGTTGAATTT 1441
Query 1356 TTAGATCCTACACGGTTGGACAAACAATCTCGGGAAGGATTTCTACCTGTCAAGGCATCA 1415
|||||||||||||||||| ||||||||||||||||||||||| |||| || |||||||||
Sbjct 1442 TTAGATCCTACACGGTTGAACAAACAATCTCGGGAAGGATTTATACCGGTTAAGGCATCA 1501
Query 1416 GATGTTGAGAAAGAGATTCTAAAGAAAAGGTCAGGAATTCTTCACGGCGTGAAAAGTAAG 1475
|||||||||||||||| |||||||||||||||||||||||||||||| || ||||||| |
Sbjct 1502 GATGTTGAGAAAGAGAGTCTAAAGAAAAGGTCAGGAATTCTTCACGGAGTCAAAAGTA-G 1560
Query 1476 -ATGCAG-ATCTTTAAGGCAGGGGATACCAATCTTCCTGAGAATGATGAACTGTTCCAGC 1533
|||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 TATGCAGGAA-TTTAGGGCAGGGGATACCAATCTTCCTGAGAATGATGAACTGTTCCAGC 1619
Query 1534 TATTGAGGAATCTAAAGATGCATATGGTGGAAATGGGCTATGTCGCTGATACAA-AACCT 1592
||||||||||| |||||||||||||||||||| |||||||||||||||| |||| || |
Sbjct 1620 TATTGAGGAATTTAAAGATGCATATGGTGGAAGTGGGCTATGTCGCTGAAACAAGAA--T 1677
Query 1593 G-CTTTGCATGATATAGACCAAGAGAGTAAAGAGACAGCACTTCTTGGTCATAGCGAGAG 1651
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1678 GGCTTTGCATGATATAGACCAAGAGAGTAAAGAGACATTACTTCTTGGTCATAGCGAGAG 1737
Query 1652 AATAGCTTTTGCTCGTGCTGTTCTTAACACC-CCGCCCCGTAAACCTTTCACTGTGATGA 1710
|||||||||||||||||||||||| |||| | || ||||||||||||||||||||||| |
Sbjct 1738 AATAGCTTTTGCTCGTGCTGTTCTCAACAGCGCC-CCCCGTAAACCTTTCACTGTGATCA 1796
Query 1711 AAAACCTTCGTGTGTGTGTTGATTGTCATAATGCATGGAAGATAATGGCAGTTATAGTTG 1770
||||||||||||||||||||||||||||||| |||| |||||| ||| ||| ||||||||
Sbjct 1797 AAAACCTTCGTGTGTGTGTTGATTGTCATAACGCATTGAAGATCATGTCAGATATAGTTG 1856
Query 1771 GTAGAGAAGTGATCATGCGAGATATAAAGAGATTCCACCATATGAAAAACGGGGCTTGCA 1830
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1857 GTAGAGAAGTGATCACGCGAGATATAAAGAGATTCCACCAAATGAAAAACGGGGCTTGCA 1916
Query 1831 GCTGTAATGACTATTGGTGATTAACAACAAACCTTGAGG 1869
|||||| || |||||||||||||| |||||||||||||
Sbjct 1917 CCTGTAAAGATTATTGGTGATTAACGACAAACCTTGAGG 1955
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92569804980
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5