BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932721

Length=499
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G25625.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   730    0.0  


> AT2G25625.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; 
EXPRESSED DURING: LP.06 six leaves visible, LP.04 four 
leaves visible, 4 anthesis, petal differentiation and expansion 
stage; Has 24 Blast hits to 24 proteins in 9 species: Archae 
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; 
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:10906428-10907288 
FORWARD LENGTH=782
Length=782

 Score =  730 bits (395),  Expect = 0.0
 Identities = 465/499 (93%), Gaps = 3/499 (1%)
 Strand=Plus/Plus

Query  1    AAAACAGAGGAATAACAACAATGGCAGGGAGAATAAGCTGCTGTCTAAATCTTCCTCCCC  60
            |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  118  AAAACAGAGGAAT---AACAATGGCAGGGAGAATAAGCTGCTGTCTAAATCTTCCTCCCC  174

Query  61   TATATTCAAATTCTGCACAATCATTACCTTCACTTCTCAAGACAACGTCAAAGATCTCTT  120
            || ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct  175  TAGATTCAAATTCTGCACAATCATTAGCTTCACTGCTCAAGACAACGTCAAAGATCTCTT  234

Query  121  GTAAGAGAACAGAAGATGAGACAGAGCCACGGAAGAACAAGTGTTCTCTTGTCTTTGGCG  180
            ||| |||||||||| ||||||||||||||||||| |||||||||||| ||||||| || |
Sbjct  235  GTAGGAGAACAGAAAATGAGACAGAGCCACGGAAAAACAAGTGTTCTTTTGTCTTGGGGG  294

Query  181  TGGCGGCGACTGTAATAATCGGCGCAATTCAGATCAATGATGTGGCATCAGTGGACGCGG  240
            ||||||| |||||  |||||||||  ||||||||||||||||| ||||||||||| || |
Sbjct  295  TGGCGGCAACTGTCGTAATCGGCGGGATTCAGATCAATGATGTTGCATCAGTGGAAGCTG  354

Query  241  CGGTTGTGAAATCGCCGGTAGAAGAGATGGCGGCGGGTGTGGTGCCGCCGCGGCGGTGGA  300
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct  355  CGGTTGTGAAATCGCCGGTAGAAGAGATGGCTGCGGGTGTGGTGCCGCCGCGGAGGTGGA  414

Query  301  GTGACAAGAGGACGTGTCCGCCTTGGCTTGGGAACTCGCTAGAGACTATCGTACCGGAGA  360
            |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct  415  GTGACAAGAGGACGTGTCCGCCTTGGCTTGAGAACTCGCTAGAGACCATCGTACCGGAGA  474

Query  361  ATCTTCCCCGTCCGTCGGCTCATCGACGTTTGGAGTTAGCCGGATTAGCTAAGGGTGATG  420
            ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  475  ATCTTCCTCGTCCGTCTGCTCATCGACGTTTGGAGTTAGCCGGATTAGCTAAGGGTGATG  534

Query  421  CACCACCGGTTGGTGCGGTGGTGACACGTGTCAATAGGGCTGGTTGCTTCTCCGTGTAAT  480
            |||| ||||| |||| |||| ||||||||||||| |||| |||||| |||||||||||| 
Sbjct  535  CACCGCCGGTCGGTGTGGTGATGACACGTGTCAACAGGGGTGGTTGTTTCTCCGTGTAAA  594

Query  481  TTGGAAGTTCATTACGTGT  499
            |||||||||||||||||||
Sbjct  595  TTGGAAGTTCATTACGTGT  613



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23810985678


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5