BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932725
Length=881
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25660.1 | Symbols: emb2410 | embryo defective 2410 | chr2:1... 1103 0.0
> AT2G25660.1 | Symbols: emb2410 | embryo defective 2410 | chr2:10916203-10927390
REVERSE LENGTH=6754
Length=6754
Score = 1103 bits (597), Expect = 0.0
Identities = 647/672 (96%), Gaps = 0/672 (0%)
Strand=Plus/Plus
Query 1 GAAGTGAAAATAAAACCAAATATGGATATCCGTCTGAGTGATATGAAACTTGTTTTAGGA 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5683 GAAGTGAAAATGAAACCAAATATGGATATCCGTCTGAGTGATATGAAACTTGTTTTAGGA 5742
Query 61 CCAGAGCTGAGGATAGTGTATCCTTTAATTCTTAATTTTGCTGTGAGTGGTGAGCTTGAA 120
||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 5743 CCAGAGCTGAGGATAATGTACCCTTTAATTCTTAATTTTGCTGTTAGTGGTGAGCTTGAA 5802
Query 121 CTTGATGGCATGGCTCATCCAAAATTTATCAAACCAAAGGGTGTCCTGACATTCGAGAAT 180
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 5803 CTTGATGGCATGGCTCATCCAAAATTTATCAAACCAAAGGGTGTCCTAACATTCGAAAAC 5862
Query 181 GGAGATGTCAATCTTGTGGCTACTCAGGTACGCCTGAAGAGGGAGTATCTCAACGTTGCA 240
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 5863 GGAGATGTCAATCTTGTGGCTACTCAGGTACGTCTGAAGAGGGAGCATCTCAACGTTGCA 5922
Query 241 AAGTTTGAGCCTGAACATGGACTAGACCCTCTGCTAGATTTAGCCTTAGTTGGTTCAGAA 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 5923 AAGTTTGAGCCTGAACATGGACTAGATCCTCTGCTAGATTTAGCCTTAGTTGGTTCAGAA 5982
Query 301 TGGCAATTTAGGGTCCAAAGTCGTGCCAGCAATTGGCAGGAAAAACTTGTGGTGACTTCA 360
|||||||||||||| |||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 5983 TGGCAATTTAGGGTTCAAAGTCGTGCCAGTAATTGGCAGGACAAACTTGTCGTGACTTCA 6042
Query 361 ACTCGTTCTGTGGAACAGGATGCTCTCTCACCTTCCGAGGCTGCAAAGGTGTTTGAGAGC 420
|| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 6043 ACACGTTCTGTTGAACAGGATGCTCTCTCACCTTCGGAGGCTGCAAAGGTGTTTGAGAGC 6102
Query 421 CAATTAGCAGAATCAATACTAGAAGGAGATGGACAACTTGCTTTCAAAAAACTTGCAACC 480
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 6103 CAATTAGCAGAATCCATATTAGAAGGAGATGGACAACTTGCTTTCAAAAAACTTGCAACC 6162
Query 481 GCAACACTTGAAACCATAATGCCAAGGATAGAAGGAAAAGGAGAGTTTGGTCAGGCGAGA 540
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6163 GCAACACTTGGAACCATAATGCCAAGGATAGAAGGAAAAGGAGAGTTTGGTCAGGCGAGA 6222
Query 541 TGGAGGTTGGTGTATGCCCCACAGATCCCAAGTTTACTCTCTGTTGATCCAACTGTTGAT 600
||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||
Sbjct 6223 TGGAGGTTGGTGTATGCTCCGCAGATCCCAAGTTTACTCTCTGTTGATCCAACTGTGGAT 6282
Query 601 CCTCTCAAGTCTTTGGCAAGCAACATATCATTTGGAACGGAAGTTGAAGTGCAGCTCGGA 660
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 6283 CCTCTCAAGTCTCTGGCGAGCAACATATCATTTGGAACGGAAGTTGAAGTGCAGCTCGGA 6342
Query 661 AAACGTCTTCAG 672
||||||||||||
Sbjct 6343 AAACGTCTTCAG 6354
Score = 268 bits (145), Expect = 5e-71
Identities = 165/174 (95%), Gaps = 3/174 (2%)
Strand=Plus/Plus
Query 708 TCTACAGGCCTCTGTGGTAAGACAGATGAAAGATTCTGAGATGGCGATGCAATGGACACT 767
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 6348 TCTTCAGGCCTCTGTGGTAAGACAGATGAAAGATTCTGAGATGGCAATGCAATGGACACT 6407
Query 768 TATCTATCAGCTCACAAGCCGCTTGCGTGTCCTTCTGCAATCTGCACCTTCCAAACGTTT 827
||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6408 TATTTACCAGCTCACGAGCCGCTTGCGTGTCCTTCTGCAATCTGCACCTTCCAAACGTTT 6467
Query 828 GCTTTTTGAATACTCTGCTACATCACAAGACTAAAAAGCCTTTTTGTCTTCCTC 881
||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 6468 GCTTTTTGAATACTCTGCTACATCACAAGACTAAAT--CCTTTT-GTCTTCCTC 6518
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43000429832
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5