BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932726
Length=979
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25660.1 | Symbols: emb2410 | embryo defective 2410 | chr2:1... 1482 0.0
> AT2G25660.1 | Symbols: emb2410 | embryo defective 2410 | chr2:10916203-10927390
REVERSE LENGTH=6754
Length=6754
Score = 1482 bits (802), Expect = 0.0
Identities = 837/854 (98%), Gaps = 2/854 (0%)
Strand=Plus/Plus
Query 36 CAAAATCTCTGTCTACAAGCTGAAAATCTTCGAGACTTGCTCGAGGAGATACGTGGGTAT 95
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 4129 CAAAATCTCTGTCTACAAGCTGAAAATCTTCGAGACTTGCTTGAGGAGATACGTGGGTAT 4188
Query 96 TATACTCCACCAAGTGAAGTCGTTCCTGAAGATCTAAGTCTTCCAGGTTTAGCTGAGCTC 155
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 4189 TATACTCCACCAAGTGAAGTCGTTCTTGAAGATCTAAGTCTTCCAGGTTTAGCTGAGCTC 4248
Query 156 AAAGGTCATTGGCATGGTTCGCTTGATGCTAGTGGTGGAGGCAATGGAGACACTTTGGCC 215
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4249 AAGGGTCATTGGCATGGTTCGCTTGATGCTAGTGGTGGAGGCAATGGAGACACTTTGGCC 4308
Query 216 GAATTTGACTTCCATGGAGATGATTGGGAGTGGGGGACTTACAAAACACAGCGTGTTCTG 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4309 GAATTTGACTTCCATGGAGATGATTGGGAGTGGGGGACTTACAAAACACAGCGTGTTCTG 4368
Query 276 GCTACTGGTTCGTATAGCAATGATGATGGTTTACGTCTTAAGGAGATGCTTATTCAAAAA 335
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 4369 GCTACTGGTTCGTATAACAATGATGATGGTTTACGTCTTAAGGAGATGCTCATTCAAAAA 4428
Query 336 GGAAACGCTACACTGCATGCAGATGGGACCTTATTGGGGCCAAAAACCAATCTTCATTTT 395
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 4429 GGAAACGCTACACTGCACGCAGATGGGACCTTATTGGGGCCAAAAACAAATCTTCATTTT 4488
Query 396 GCTGTTCTGAATTTCCCTGTTAGTTTGATACCTACCTTGGTTGAGGTTGTTGAATCATCA 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4489 GCTGTTCTGAATTTCCCTGTTAGTTTGATACCTACCTTGGTTGAGGTTGTTGAATCATCA 4548
Query 456 GCTACTGATCTTGTTCACTCTTTGAGGAAACTCTTGTCACCAATCAAAGGCATTTTGCAC 515
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4549 GCTACTGATATTGTTCACTCTTTGAGGAAACTCTTGTCACCAATCAAAGGCATTTTGCAC 4608
Query 516 ATGGAAGGGGATCTTAGAGGGAGTCTTGAAAAACCAGAATGTGATGTACAAGTTAGATTA 575
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 4609 ATGGAAGGGGATCTTAGAGGGAGTCTTGAAAAACCAGAATGTGATGTACAAGTTAGGTTA 4668
Query 576 TTGGATGGTGCTGTTGGTGGTATAGACCTTGGACGAGCTGAAGTTTTTGCTTCTCTTACA 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4669 TTGGATGGTGCTGTTGGTGGTATAGACCTTGGACGAGCTGAAGTTTTTGCTTCTCTTACA 4728
Query 636 TCTAACAGTCGTTTTCTTTTCAACTCCAACTTTGAACCATTTGTCCAAAATGGTCATGTC 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4729 TCTAACAGTCGTTTTCTTTTCAACTCCAACTTTGAACCATTTGTCCAAAATGGTCATGTC 4788
Query 696 CATATACAAGGAAGTGTTCCTGTTAGCTTTTCGCAGAAAAA-ATTGTCTGAGGGAGAAGA 754
||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||
Sbjct 4789 CATATACAAGGAAGTGTTCCTGTTAGCTTTTCGCAGAAAAATAT-GTCTGAAGGAGAAGT 4847
Query 755 CAGCGAAACAGATAGAGGTGGTGCAGTGAAAATCCCTAGTTGGGCAAAAGAAAAGGAAGA 814
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 4848 CAGCGAAACAGATAGAGGTGGTGCAGTGAAAATCCCGAGTTGGGCAAAAGAGAAGGAAGA 4907
Query 815 TGATGAGAAGAGAACCTCAAGGGATAGGAGCGAAGAGAGATGGGATAGCCAACTAGCTGA 874
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 4908 TGATGAGAAGAGAACCTCAAGGGATAGGAGCGAAGAGAGATGGGACAGCCAACTAGCTGA 4967
Query 875 GAGTCTCAAGTGTT 888
|||||||||| |||
Sbjct 4968 GAGTCTCAAGGGTT 4981
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47923376238
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5