BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932727
Length=1310
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25660.1 | Symbols: emb2410 | embryo defective 2410 | chr2:1... 505 5e-142
> AT2G25660.1 | Symbols: emb2410 | embryo defective 2410 | chr2:10916203-10927390
REVERSE LENGTH=6754
Length=6754
Score = 505 bits (273), Expect = 5e-142
Identities = 277/279 (99%), Gaps = 0/279 (0%)
Strand=Plus/Plus
Query 992 TGATCACTGTTGAGAAAACTATTCTGGAACAAAGCAATAGCCGGTATGAGCTTCAAGGTG 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3830 TGATCACTGTTGAGAAAACTATTCTGGAACAAAGCAATAGCCGGTATGAGCTTCAAGGTG 3889
Query 1052 AATATGTATTGCCGGGTTCCCGTGACCGAGACCTTGGTCAGAAGGAAGCTGGCAGttttt 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3890 AATATGTATTGCCGGGTTCCCGTGACCGAGACCTTGGTCAGAAGGAAGCTGGCAGTTTTT 3949
Query 1112 ttATGAGAGCCATGACTGGTCATCTAGGAAGTGTTATATCCTCCATGGGTAGATGGAGAA 1171
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 3950 TAATGAGAGCCATGACTGGTCATCTAGGAAGTGTTATATCCTCCATGGGAAGATGGAGAA 4009
Query 1172 TGAGACTTGAAGTGCCTAAGGCAGAGGTTGCTGAGATGCTTCCTCTTGCAAGGCTTCTTT 1231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4010 TGAGACTTGAAGTGCCTAAGGCAGAGGTTGCTGAGATGCTTCCTCTTGCAAGGCTTCTTT 4069
Query 1232 CAAGAAGTACAGATCCAGCTGTTCACTCAAGATCAAAGG 1270
|||||||||||||||||||||||||||||||||||||||
Sbjct 4070 CAAGAAGTACAGATCCAGCTGTTCACTCAAGATCAAAGG 4108
Score = 211 bits (114), Expect = 1e-53
Identities = 120/123 (98%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 871 GCAGAGATTCAACTAAATCTTCAGAAGCGAAGAGGACATGGCCTGTTGTCTGTAATTCGG 930
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 3676 GCAGAGATTCAACTAAATCTTCAGAAGCGAAGAGGGCATGGCCTGTTGTCTGTAATTCGG 3735
Query 931 CCAAAATTTAGTGGAGTTCTAGGTGAAGCTTTAGATGTTGCAGTCAGATGGAGCGGTGAC 990
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 3736 CCAAAGTTTAGTGGAGTTCTAGGTGAAGCTTTAGATGTTGCAGTAAGATGGAGCGGTGAC 3795
Query 991 GTG 993
|||
Sbjct 3796 GTG 3798
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64457499780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5