BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932730

Length=490
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G25360.1 | Symbols:  | RING/U-box superfamily protein | chr2...   235    3e-61
  AT5G37560.1 | Symbols:  | RING/U-box superfamily protein | chr5...   110    2e-23


> AT2G25360.1 | Symbols:  | RING/U-box superfamily protein | chr2:10804249-10805761 
FORWARD LENGTH=1122
Length=1122

 Score =  235 bits (127),  Expect = 3e-61
 Identities = 215/255 (84%), Gaps = 16/255 (6%)
 Strand=Plus/Plus

Query  234  AAGTTTTTGACACCT-GAGCTGATAGAGATGTGGAAACAAAAGATGAGAGAGGACTCGAT  292
            ||| ||||||||  | |||||||| |||||||||||||||||||||| ||||||||||||
Sbjct  448  AAGGTTTTGACA-TTAGAGCTGATTGAGATGTGGAAACAAAAGATGAAAGAGGACTCGAT  506

Query  293  TCCAGCTGAAGAGAGAATCTATTGCCCATATCCAAAATGCTCAAT-CTTGATGTCTAAAA  351
            ||| |||| ||||||||||||||||||||||||||| |||||||| | | ||||| ||||
Sbjct  507  TCCCGCTGCAGAGAGAATCTATTGCCCATATCCAAACTGCTCAATGC-TAATGTCCAAAA  565

Query  352  CCGAGCTTTCAAGATCTGCTAATGAAGCCTCAGATCAATCCAATGTTCGGACATGTATCA  411
            |||||||||| ||   ||  |||     | | || | ||||||||  ||  | ||| |||
Sbjct  566  CCGAGCTTTCTAG---TG--AAT-----C-C-GACCTATCCAATGACCGTTCTTGTGTCA  613

Query  412  AGTGTTGTGGACTCTTTTGCATTGATTGCAAAGTACCATCACATTCTGTTTTGTCGTGAG  471
            | |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
Sbjct  614  AATGTTGTGGACTCTTCTGCATTGATTGCAAAGTACCATCACATTCTGATTTGTCGTGTG  673

Query  472  CTGATTACAAGAAAC  486
            |||| ||||| ||||
Sbjct  674  CTGAGTACAAAAAAC  688


> AT5G37560.1 | Symbols:  | RING/U-box superfamily protein | chr5:14921986-14923790 
FORWARD LENGTH=1335
Length=1335

 Score =  110 bits (59),  Expect = 2e-23
 Identities = 98/116 (84%), Gaps = 6/116 (5%)
 Strand=Plus/Plus

Query  116  CATATGTAGTGA-AGAAACCGTA-GCGGAGCGCATGTTCTTTAACGACAAATGCCTTCAC  173
            ||| |||||||| | |||||| | || |||| |||||| || ||||||||||||||||||
Sbjct  546  CATTTGTAGTGACA-AAACCG-ACGCTGAGCACATGTTATTGAACGACAAATGCCTTCAC  603

Query  174  CGTCATTGCTTTTCTTGTGTTAAAAATCATGTGAAAGCGAAGCTG-GATAGCGGAA  228
            ||||||||||||||||| || ||| | || ||||||| ||||||  | ||||||||
Sbjct  604  CGTCATTGCTTTTCTTGCGTGAAACAGCAAGTGAAAGTGAAGCTTCG-TAGCGGAA  658



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23358878355


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5