BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932731
Length=293
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29276.1 | Symbols: | Pseudogene of AT4G29270; acid phospha... 196 7e-50
> AT4G29276.1 | Symbols: | Pseudogene of AT4G29270; acid phosphatase
class B family protein | chr4:14426790-14427183 REVERSE
LENGTH=394
Length=394
Score = 196 bits (106), Expect = 7e-50
Identities = 169/199 (85%), Gaps = 5/199 (3%)
Strand=Plus/Plus
Query 27 TTTTCTCGTAGCAGCTTAATTTCCTTCTTCAGCCTCGC--TTTATTCGCCGTC-T--TTA 81
|||||||||||||||| || |||||||||| |||| | ||||||||| ||| | |||
Sbjct 7 TTTTCTCGTAGCAGCTCGATCTCCTTCTTCATCCTCACTTTTTATTCGCTGTCATAATTA 66
Query 82 ATCCAACAATCTCTTCACGTGTCCCTTCCTTCATTAAGCTCCCGAGCTCCGTCGAATCTA 141
|||| || |||||||||| ||| | |||||||| ||||||| |||||||| |||||||
Sbjct 67 ATCCTACGATCTCTTCACACGTCTCATCCTTCATCAAGCTCCAGAGCTCCGACGAATCTC 126
Query 142 GCTCTTCCGTCGCTTCCTACTGCGAGGGCTGGAAATTGGCTGCCGAGACCGACAATGCAG 201
||||||||||||||||||||||||||||||||| |||| | ||||||||| ||||||| |
Sbjct 127 GCTCTTCCGTCGCTTCCTACTGCGAGGGCTGGAGATTGACCGCCGAGACCAACAATGCCG 186
Query 202 GAAAGTGGAAGGTGGTTCC 220
||| || | |||||||||
Sbjct 187 GAACCTGTAGGGTGGTTCC 205
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13522024481
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5