BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932734
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25670.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 1642 0.0
AT4G32610.1 | Symbols: | copper ion binding | chr4:15728143-15... 606 1e-172
> AT2G25670.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: copper ion binding (TAIR:AT4G32610.1); Has 43784 Blast
hits to 26928 proteins in 1799 species: Archae - 86; Bacteria
- 6347; Metazoa - 15971; Fungi - 5398; Plants - 1931;
Viruses - 259; Other Eukaryotes - 13792 (source: NCBI BLink).
| chr2:10928664-10931062 REVERSE LENGTH=1690
Length=1690
Score = 1642 bits (889), Expect = 0.0
Identities = 1019/1079 (94%), Gaps = 19/1079 (2%)
Strand=Plus/Plus
Query 1 TAGCTGAATCGTGTGTTAAGATGGCTGGAGGTGGAAACAGGAGAGATGAAGGATCGATCA 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 TAGCTGAATCGT-TGTTAAGATGGCTGGAGGTGGAAACAGGAGAGATGAAGGATCGATCA 375
Query 61 CGATCCAGAGTACCAATTTGTTTGCAGCTTTGGATACTCGTAAGAAGAAGAAGAAG--T- 117
|||||||||| || |||||||||||||| ||||| ||||||||||||||||||||| |
Sbjct 376 CGATCCAGAGCACTAATTTGTTTGCAGCATTGGACACTCGTAAGAAGAAGAAGAAGTCTG 435
Query 118 ------CAGGGAAGAACAAAGGGTCTTCTAAGTCACGAGAGCCAGAGAAGGAGCCTGAGC 171
||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 ACAAGGCAGGGAAGAGCAAAGGGTCTTCTAAGTCACGAGAGCCAGAGAAGGAGCCTGAGC 495
Query 172 CTCAGGTCTTTTGGGCACCTACTCCGTTGAAAGTTAAGTCTTGGGCTGATATtgatgatg 231
||||||||| |||||| ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 496 CTCAGGTCTATTGGGCTCCTACGCCTTTGAAAGTTAAGTCTTGGGCTGATATTGATGATG 555
Query 232 acgatgatgatgatgaCTATTATGCAACCACTGCTCCTCCTCAGTCTGGTTGGAGCACTT 291
| || || ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 556 AAGACGACGATGATGACTATTATGCAACCACTGCTCCTCCTCAGTCTGGTTGGAGTACTT 615
Query 292 CTGTGCCTTCCCATTCGGATTCGAAAGACGTTCATGTCGAGGAAAGTGAAAGTGAGGACG 351
|| ||||||||||| | ||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 616 CTCTGCCTTCCCATACTGATTCCAAAGACGTTCATGTTGAGGAAAGTGAAAGTGAGGAAG 675
Query 352 ATATTCTTGATGAAGGTGATGATGATGTGGAGGAAGAGCAGGAACAGGAAACAGAGGTAC 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 ATATTCTTGATGAAGGTGATGATGATGTGGAGGAAGAGCAGGAACAGGAAACAGAGGTAC 735
Query 412 AGGTTCATCCAGAGCCTGAGCCTGAGGTGAAGAAAGCTCCTGAAGTTCCTGCACCTCCTA 471
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 AGGTTCATCC--A----GAGCCTGAGGTGAAGAAAGCTCCTGAAGTTCCTGCACCTCCTA 789
Query 472 AAGAGGCAGAGAGGCAACTTTCCAAGAAAGAGAGGAAAAAGAAGGAACTTGCTGAGCTTG 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 AAGAGGCAGAGAGGCAACTTTCCAAGAAAGAGAGGAAAAAGAAGGAACTTGCTGAGCTTG 849
Query 532 AGGCTTTGTTGGCTGATTTTGGTGTTGCTCCCAAGGAGAATAATGGCCAAGATGAATTTC 591
| |||||||||||||||||||| ||||| ||||||||||| ||||||| ||| |||| ||
Sbjct 850 AAGCTTTGTTGGCTGATTTTGGAGTTGCCCCCAAGGAGAACAATGGCCTAGAGGAATCTC 909
Query 592 AAGAGGCCAAACATGAAAAGAAAGAAGATGTCAATGGAGAGGGAGAGAAGAAGGAGAATG 651
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 AAGAGGCTGGACAAGAAAAGAAAGAAGATGTCAATGGAGAGGGAGAGAAGAAGGAGAATG 969
Query 652 CAGCAGGTGGGGAGTCAAAGGCATcaaaaaagaagaagaagaaggataagcagaaggagg 711
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 970 CAGCAGGTGGGGAGTCAAAGGCATCAAAAAAGAAGAAAAAGAAGGATAAGCAGAAGGAGG 1029
Query 712 taaaagaatctcaagagcagcaagcaaaCAACAATGCTGATGCTGTAGATGAAGCTGCTG 771
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1030 TAAAAGAATCTCAAGAGCAACAAGCAAACAACAATGCCGATGCTGTAGATGAAGCTGCTG 1089
Query 772 GGTCTGAACCAACTGAGGAAGAAACTCCAATTGATGTCAAAGAAAGGCTGAAA-AAGCTT 830
||||||||||||||||||||||| |||||||||| ||||| |||||| | ||| ||||||
Sbjct 1090 GGTCTGAACCAACTGAGGAAGAATCTCCAATTGACGTCAAGGAAAGGAT-AAAGAAGCTT 1148
Query 831 GCATCCATGAAGAAGAAGAAGTCAGGCAAAGAGGTGGATGCTGCAGCTAAAGCTGCTGCG 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1149 GCATCCATGAAGAAGAAGAAGTCAGGCAAAGAGGTGGATGCTGCAGCTAAAGCTGCTGCG 1208
Query 891 GAGGAAGCAGCTGCAAGACGTAAGAAGCTGGCCGCTGCAAAGAAGAAGGAGAAGAACCAC 950
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1209 GAGGAGGCAGCTGCAAGACGTAAGAAGCTGGCCGCGGCAAAGAAGAAGGAGAAGAATCAC 1268
Query 951 TATAACCAACAGCCTGTGCGGTAAA-TCCTGAATCATCACCATTTTGATCTTGATGGAAA 1009
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 1269 TATAACCAACAGCCTGTGCGGTAAAATCCTGAATCACCACCATTTTGATCTTGATGGAAA 1328
Query 1010 TGCAAATATGAACATGTATTTCGCCGTATATTGTTCATATGAGTCTCTGTCCTAATAAA 1068
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1329 TGCAAATATGAACATGTATTTCGCCGTATATTGTTCATATGAGTCTCTGTCCTAATAAA 1387
> AT4G32610.1 | Symbols: | copper ion binding | chr4:15728143-15730356
REVERSE LENGTH=1640
Length=1640
Score = 606 bits (328), Expect = 1e-172
Identities = 782/990 (79%), Gaps = 76/990 (8%)
Strand=Plus/Plus
Query 18 AAGATGGCTGGAGGTGGAAACAGGAGAGATGAAGGATCGAT-CACGATCCAGAGTACCAA 76
||||||| ||| |||||||||||||||||||| |||||||| | |||| |||| |||||
Sbjct 457 AAGATGGTTGGTGGTGGAAACAGGAGAGATGAGGGATCGATGC-CGATTCAGAACACCAA 515
Query 77 TTTGTTTGCAGCTTTGGATAC-TCGTAAGAAGAAGAAGAAGTC-----A-G--GG-AAGA 126
|||||||| ||||||||||| ||| | ||||||||||||||| | | || ||||
Sbjct 516 CTTGTTTGCTGCTTTGGATACTTCG-AGGAAGAAGAAGAAGTCTGATAAGGCTGGTAAGA 574
Query 127 ACAAAGGGTCTTCTAAGTCACG-AGAGCCAGAGAAGGAGCCTGAGCCTCAGGTCTTT-TG 184
||||| || |||||| | | ||| || |||||||||||||||| ||||| ||| ||
Sbjct 575 GCAAAGCTTCCTCTAAGAGA-GAAGATTCACAGAAGGAGCCTGAGCCACAGGT-TTTCTG 632
Query 185 GGCACCTACTCCGT-TGAAAGTTAAGTCTTGGGCTGATATtgatga-tgacgatgatgat 242
||||||||| || | | |||| ||| ||||||||||||| ||| | || ||||| |||
Sbjct 633 GGCACCTACGCC-TCTCAAAGCAAAGGCTTGGGCTGATATCGAT-AGCGATGATGAAGAT 690
Query 243 gatgaCTATTATGCAACCACTGCTCCTCCTCAGT--CTGGTTGGAGCACTTCTG-TGCCT 299
||||| ||||| || ||||||||||| ||||||| || | ||||||||||||| |||
Sbjct 691 GATGATTATTACGCTACCACTGCTCCACCTCAGTCCCT-G-TGGAGCACTTCTGAAGCC- 747
Query 300 TCCCATTCGGATTCGAAAGACGTTCATGTC-GAGGAAAGTGAAAGTGAGGACGATATTCT 358
|||||||| ||| | |||||||||| | | ||||||| |||||| || || || | |||
Sbjct 748 TCCCATTCAGATGCTAAAGACGTTCCCG-CTGAGGAAATTGAAAGCGAAGAAGACACTCT 806
Query 359 TGATGA---AGGTGATGATGATGTGGAGGAAGAGCAGGAACAGGAAACAGAGGTACAGGT 415
|||||| || ||||||||||||||||||||| || || |||| ||||||| ||| ||
Sbjct 807 TGATGATGGAGATGATGATGATGTGGAGGAAGATCACGAGCAGGGAACAGAGACACAAGT 866
Query 416 TCATCCAG-AGCCTGAGCCTGAGGTGAAGAAA-GCTCCTGAAGTTCCTGCACCTCCTAAA 473
|||||||| || | |||||||||||||| ||| ||||||||||||| ||| ||||||||
Sbjct 867 TCATCCAGAAG-CAGAGCCTGAGGTGAA-AAAGGCTCCTGAAGTTCGTGCTCCTCCTAAG 924
Query 474 GAGGCAGAGAGGCAACTTTCCAAGAAAGAGAGGAAAAAGAAGGAACTTGCTGAGCTTGAG 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 GAGGCAGAGAGGCAACTTTCCAAGAAAGAGAGGAAAAAGAAGGAACTTGCTGAGCTTGAG 984
Query 534 GCTTTGTTGGCTGATTTTGGTGTTGCTCCCAAGGA-GAATAATGGCCAAGATGAATTTCA 592
|||||| | || |||||||| ||||| |||| || || ||||| ||| | || | |||
Sbjct 985 GCTTTGCTAGCAGATTTTGGAGTTGCAACCAAAGATGAG-AATGGTCAACAAGACTCTCA 1043
Query 593 AGAGGCCAAACATGAAAAGAAAGAAGATGTCAATGGA-GAGGGAGAGAAGAAGGAGAATG 651
||| || || |||||||||| || |||| | ||||||||||||||||||||
Sbjct 1044 AGAT---AAGGGGGAGAAGAAAGAAG-TG--AATG-ATGAGGGAGAGAAGAAGGAGAA-- 1094
Query 652 CAGCAGGTGGGGAGTCAAAGGCATcaaaaaagaagaagaagaaggataagcagaaggagg 711
|| || || || |||||||| ||||| |||||||| |||||||| || |||||||||
Sbjct 1095 CA-CAACCGGAGAATCAAAGGCCTCAAAGAAGAAGAAAAAGAAGGACAAACAGAAGGAGC 1153
Query 712 taaaagaatctcaagagcagcaagcaaaCAACAA-TGCTGATGCTGTA-GATGAAGCTGC 769
|||||||||| || ||| | ||| || | ||| | | ||||||| | | ||| | | |
Sbjct 1154 TAAAAGAATCCCA-GAGT-G-AAGTGAAGAGCAACT-CGGATGCTGCAAG-TGA-G-TCC 1206
Query 770 TGGGTCTGAACCAACTGAGGAAGAAA-CT-C--CAATTGATGTCAAAGAAAGGCTGAAA- 824
| |||| | | ||||| | || | | || || ||||||||| |||| |||
Sbjct 1207 -G---CTGAGC-AG--GAGGA-GTCTTCTTCTTCCATCGACGTCAAAGAACGGCT-AAAG 1257
Query 825 AAGCTTGCATCCATGAAGAAGAAGAAGTCAGGCAAAGAGGTGGATGCTGCAGCTAA-AGC 883
||| ||||||| |||||||||||||| ||| |||| ||||| |||| ||| | || |||
Sbjct 1258 AAGATTGCATCAATGAAGAAGAAGAAATCAAGCAAGGAGGTTGATGGTGCTTC-AACAGC 1316
Query 884 TGCTGCGGAGGAAGCAGCTGCAAG-ACGTAAGAAGCTGGCCGCTGCAAAGAAGAAGGAGA 942
|||||| ||||||||||||| || | | | ||| ||||||| || ||||| || || |
Sbjct 1317 TGCTGCAAAGGAAGCAGCTGCGAGGAAGGCA-AAGTTGGCCGCAGCGAAGAAAAAAGAAA 1375
Query 943 AGAACCACTATAACCAACAGCCTGTGCGGT 972
|||| |||| || || || |||||| |||
Sbjct 1376 AGAAAAACTACAATCAGCAACCTGTGAGGT 1405
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52308967890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5