BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932737
Length=763
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33580.2 | Symbols: ATBCA5, BCA5 | beta carbonic anhydrase 5... 438 3e-122
AT2G17950.1 | Symbols: WUS, PGA6, WUS1 | Homeodomain-like super... 326 2e-88
> AT4G33580.2 | Symbols: ATBCA5, BCA5 | beta carbonic anhydrase
5 | chr4:16138360-16141624 FORWARD LENGTH=1361
Length=1361
Score = 438 bits (237), Expect = 3e-122
Identities = 337/380 (89%), Gaps = 27/380 (7%)
Strand=Plus/Plus
Query 1 AAGCTTCAAACTTGCAAGTGATGGCTTCAGGAAAGACACCTGGACTGACTCAGGAAGCTA 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 AAGCTACAAACTTGCAAGTGATGGCTTCAGGAAAGACACCTGGACTGACTCAGGAAGCTA 396
Query 61 ATGGGGTTGCAATTAATAGACAAAATGACAATGATGTATTTGACGACATGAAACAGCGGT 120
|||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 397 ATGGGGTTGCAATTGATAGACAAAACAACACTGATGTATTTGACGACATGAAACAGCGGT 456
Query 121 TCCTCGCCTTCAAGAAG-----G---AT-----A--ACTTAGAACACTACAAAAATTTGG 165
|||| |||||||||||| | || | |||| ||||||||||||||| |||
Sbjct 457 TCCTGGCCTTCAAGAAGCTTAAGTACATCAGGGATGACTTTGAACACTACAAAAATCTGG 516
Query 166 CAGATGTTCAAGCTCCGAAGTGTAAGCAACAGTTTCTGGTGATCGCTTGTGCAGACTCTA 225
|||||| ||||||| | ||| ||||||||||||| ||||||||||||||||
Sbjct 517 CAGATGCTCAAGCT-C----------CAA-AGTTTCTGGTGATTGCTTGTGCAGACTCTA 564
Query 226 GGGTTTGTCCTTCTACTGTCCTGGGATTCCAACCGGGTGATGCATTCACTGTTCGCAACA 285
| |||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 565 GAGTTTGTCCTTCTGCTGTCCTGGGATTCCAACCGGGTGACGCATTCACTGTTCGTAACA 624
Query 286 TTGCAAATTTAGTACCTTCATATGAGTCGGGACCTACTGAAACCAAAGCTGCTCTAGAGT 345
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 625 TTGCAAATTTAGTACCTCCATATGAGTCTGGACCTACTGAAACCAAAGCTGCTCTAGAGT 684
Query 346 TCTCTGTGAATACTCTTAAT 365
||||||||||||||||||||
Sbjct 685 TCTCTGTGAATACTCTTAAT 704
> AT2G17950.1 | Symbols: WUS, PGA6, WUS1 | Homeodomain-like superfamily
protein | chr2:7808871-7810795 REVERSE LENGTH=1232
Length=1232
Score = 326 bits (176), Expect = 2e-88
Identities = 278/323 (86%), Gaps = 23/323 (7%)
Strand=Plus/Plus
Query 377 TACTGAATGTGGTGCTGTTAATGCTTCTAATGGCCCCATTAATA--CA---C-AT-G-TC 428
|||||||||||||| ||||||||||||||||||| ||| | || || | || | ||
Sbjct 646 TACTGAATGTGGTGTTGTTAATGCTTCTAATGGCTACATGAGTAGCCATGTCTATGGATC 705
Query 429 TAT-------GACTGTTCTATAAATTACAACAACGTAGGTGGAGGATGGGCAAACTTGGA 481
||| ||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 706 TATGGAACAAGACTGTTCTATGAATTACAACAACGTAGGTGGAGGATGGGCAAACATGG- 764
Query 482 TTATAATCATCACTACTCATTTGCGCCTTGCAACTTCTTGC-ATAGACCAAAGCCTATGT 540
||||||| ||||||| ||| |||| ||||||||| | ||||| |||||||| |||
Sbjct 765 -----ATCATCATTACTCATCTGCACCTTACAACTTCTT-CGATAGAGCAAAGCCTCTGT 818
Query 541 TTGGTCTGGAAGGTCGTCAAGAAGAAGAAGAATGTGGTGTCAATGCTTATCTGGAACATC 600
||||||| ||||||| ||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 819 TTGGTCTAGAAGGTCATCAAGAAGAAGAAGAATGTGGTGGCGATGCTTATCTGGAACATC 878
Query 601 GACGTAGGCTTCCTCTCTTCCCTATGCACGGTGAAGATCACCTCAACGGTGATAGCGGTG 660
|||||| |||||||||||||||||||||||||||||||||| ||||||||| ||| ||||
Sbjct 879 GACGTACGCTTCCTCTCTTCCCTATGCACGGTGAAGATCACATCAACGGTGGTAGTGGTG 938
Query 661 CTATCTGGAAGTATGGCCAATCG 683
| |||||||||||||||||||||
Sbjct 939 CCATCTGGAAGTATGGCCAATCG 961
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37072800486
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5