BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932743

Length=395
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G25735.1 | Symbols:  | unknown protein; Has 31 Blast hits to...   536    5e-152


> AT2G25735.1 | Symbols:  | unknown protein; Has 31 Blast hits 
to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr2:10975060-10975759 REVERSE 
LENGTH=700
Length=700

 Score =  536 bits (290),  Expect = 5e-152
 Identities = 361/395 (91%), Gaps = 6/395 (2%)
 Strand=Plus/Plus

Query  1    GAACAGAAGaaaaaaaaaaaaTGATGTTTGAATCTCCAAGCAAGAAGAGAT-G---G--A  54
            |||||||| | ||  || |||||||||| |||||| ||||||| ||||||| |   |  |
Sbjct  36   GAACAGAACAGAAGGAAGAAATGATGTTAGAATCTTCAAGCAAAAAGAGATGGAACGTTA  95

Query  55   ACGTGTTATCATCAGCTTCATCTTACAGAGAGACAATTGTACTTGGAAGATATAGCAAGA  114
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  96   ACGTGTTATCATCAGCTTCATCTCACAGAGAGACAATTGTACTTGGAAGATATAGCAAGA  155

Query  115  GTTGTAGAGAACAGAAGCAACAACAACGAAGAGCAAGACTCTTTCCCAAGTGGAAGGTTA  174
            |||| ||||||||||||||||| |||||||||| ||| ||||| ||||| ||||||||| 
Sbjct  156  GTTGCAGAGAACAGAAGCAACACCAACGAAGAGAAAGGCTCTTGCCCAAATGGAAGGTTT  215

Query  175  TGTTGATGAAGCTTAAGCTCTTGCCTTCTCGTTCTTCTTCCACTAAGGTCGTGGCTTATG  234
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  216  TGTTGATGAAGCTTAAGCTCTTGCCTTCTCGTGCTTCTTCCACTAAGGTCGTGGCTTATG  275

Query  235  AGCCTTGCGATTACTCTTTGAATTTTGATCAAGGTCCAGGATGGCACGACCACGATGAGC  294
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  276  AGCCTTGTGATTACTCTTTGAATTTTGATCAAGGTCCAGGATGGCACGACCACGATGAGC  335

Query  295  CTGAGAATCTTTCTCGGTCTTTTTCTTCTCGCTTCTCTGATCCTACTCGGATTCGAGCAA  354
            ||||||||||||| |||||||| || | ||||||| ||||||| || ||||| |||| ||
Sbjct  336  CTGAGAATCTTTCACGGTCTTTCTCCTGTCGCTTCGCTGATCCCACACGGATCCGAGAAA  395

Query  355  CACGCTTGCTCTTGTATTAAGTTTACTTTTCtttt  389
            ||||||| |||||||||||||||||||||||||||
Sbjct  396  CACGCTTTCTCTTGTATTAAGTTTACTTTTCTTTT  430



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18649334879


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5