BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932750

Length=553
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G25770.1 | Symbols:  | Polyketide cyclase/dehydrase and lipi...   640    0.0  


> AT2G25770.1 | Symbols:  | Polyketide cyclase/dehydrase and lipid 
transport superfamily protein | chr2:10992808-10993652 FORWARD 
LENGTH=743
Length=743

 Score =  640 bits (346),  Expect = 0.0
 Identities = 480/543 (88%), Gaps = 15/543 (3%)
 Strand=Plus/Plus

Query  8    CTCTCTCTTTGACATGGAAAAAGCTTCAAGCCCTGAAAAATGGCGAGCCAAAGTGTCAAC  67
            ||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||  
Sbjct  65   CTCTCTCTTTGACATGGAAAAAGCTTCAAGCCCAGAAAAATGGCTAGCCAAAGTATCAGT  124

Query  68   TACGCTCACAAAGGCAAAGCCTGACCAAATTTGGCTTCTCTTCACCGATTTCTTCAACCT  127
            ||||||||||||||||||||||||| |||| |||| ||||||||||||||| ||||| ||
Sbjct  125  TACGCTCACAAAGGCAAAGCCTGACGAAATCTGGCCTCTCTTCACCGATTTTTTCAATCT  184

Query  128  CCACAAGTGGCTTCCAACGCTCGTCACGTGTCACGGCGTCCACGGCAACAACGGTGAGCC  187
            ||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||| | 
Sbjct  185  CCACAAGTGGCTTCCAACGCTAGCCACATGTCACGGCGTCCACGGCAACAACGGTGAACA  244

Query  188  CGGCTGCATCAGATTCTGCTCTAGCTCCGCCATACGATCCAACGGTGTAGAATCTGCCGC  247
             || |||||||||||||| ||  |||   ||||| |||||||||||||||| || |||||
Sbjct  245  GGGTTGCATCAGATTCTGTTCCGGCTTTTCCATAGGATCCAACGGTGTAGACTCCGCCGC  304

Query  248  GGGATGGTCGAAGGAAAAGCTGGTGGCCGTTGATCCTGTGGAACGTGTGATGAGATACGA  307
            | ||||||| ||||| ||||| ||||||||| ||||||| ||||||||||||||||||||
Sbjct  305  GAGATGGTCAAAGGAGAAGCTTGTGGCCGTTAATCCTGTTGAACGTGTGATGAGATACGA  364

Query  308  GATAGTGGAGAGTAACATTGGATTCGAATCCTACGTTTCGACGGTGAAGATATCGCCACG  367
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct  365  GATAGTGGAGAGTAACACTGGATTCGAATCCTACGTTTCGACGGTGAAGATATTGCCACG  424

Query  368  TGGTGAAGATGGAGACGTTGATGGTTGCGTGATAGAGTGGAGTTTCACCGTTGATCCAGT  427
            ||| ||||||||     ||| || | |  |  | ||||||||||||||||||||||| ||
Sbjct  425  TGGCGAAGATGG-----TTG-TG-T-GA-T--T-GAGTGGAGTTTCACCGTTGATCCTGT  472

Query  428  GAGAGGATTGTCTTTAGATGATTTGGTGATGAAGTATGAGAAAGCACTAGAGGTAATCAC  487
            |||||||||||| |||||  ||||||| | |||||||||||||||| ||||| |||||||
Sbjct  473  GAGAGGATTGTCGTTAGAAAATTTGGTTAAGAAGTATGAGAAAGCATTAGAGATAATCAC  532

Query  488  CAAGAACATGGAAGAAGAGGCTTTGACAAGAAGAGAGTC-T-T-CTTAGAAATGTTGTTG  544
            |||||||||||||||||| ||||||| |||||||||||| | | ||||||||  ||||||
Sbjct  533  CAAGAACATGGAAGAAGATGCTTTGAGAAGAAGAGAGTCGTCTTCTTAGAAAAATTGTTG  592

Query  545  ATA  547
            |||
Sbjct  593  ATA  595



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26523629616


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5