BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932754
Length=2923
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25790.1 | Symbols: | Leucine-rich receptor-like protein ki... 4263 0.0
> AT2G25790.1 | Symbols: | Leucine-rich receptor-like protein
kinase family protein | chr2:11000599-11004235 FORWARD LENGTH=3119
Length=3119
Score = 4263 bits (2308), Expect = 0.0
Identities = 2725/2930 (93%), Gaps = 14/2930 (0%)
Strand=Plus/Plus
Query 1 CCAAAGAAACAAAAGCAAACATGTCTACTTCTCATCATCATCATCACGCTCCATATCTCA 60
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 13 CCAAAGAAACAAAAGCAAACATGTCTACTTCTCATCATCATCATCACCCTCCTTATCTCA 72
Query 61 TTACAACATTATTCTTCTTGTTTCTTAACTTCTCTTGCCTTCATGCAAATGAACTCGAGC 120
| || ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 73 TCACCACATTATTCTTCTTGTTTCTTAACTTCTCCTGCCTCCATGCAAATGAACTCGAGC 132
Query 121 TTCTCTTATCATTCAAATCCTCAATTCAAGACCCTCTAAAACACCTCTCTTCTTGGTCCT 180
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 133 TTCTCTTATCATTCAAATCCTCAATTCAAGACCCTCTAAAACACCTCTCCTCTTGGTCTT 192
Query 181 ACTCTTCAACTAATGATGTGTGTCTTTGGACAGGCGTCGTTTGCAACAACTTCTCTCGTG 240
|||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 193 ACTCTTCAACCAATGATGTGTGTCTTTGGAGTGGCGTCGTTTGCAACAACATCTCTCGTG 252
Query 241 TTGTCTCTCTCGATCTCTCCGGCAAGAACATCTCAGGCCAAATCCTCACATCCGCTACTT 300
||||||||||||||||||||||||||||||| || || ||||||||||| |||||||||
Sbjct 253 TTGTCTCTCTCGATCTCTCCGGCAAGAACATGTCCGGTCAAATCCTCACCGCCGCTACTT 312
Query 301 TCCGGCTACCTTTTCTACGAACTATCAACCTCTCAAACAACAACTTGTCCGGTCCAATCC 360
| || ||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
Sbjct 313 TTCGCCTACCTTTTCTTCAAACTATCAACCTCTCAAACAACAACTTGTCCGGTCCAATAC 372
Query 361 CTCAAGATATCTTTACCACTTCGTCTCCTTCTCTTCGTTACCTCAACTTAAGCAACAACA 420
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 373 CTCACGATATCTTTACCACTTCGTCTCCTTCTCTCCGTTACCTCAACTTAAGCAACAACA 432
Query 421 ACTTCTCTGGCTCGATCTCTCGAGGCTTTCTTCCAAACCTCTACACGTTAGATCTTTCAA 480
|||| || ||||| ||| |||||||||||||||| ||||||||||||||||||||||| |
Sbjct 433 ACTTTTCCGGCTCCATCCCTCGAGGCTTTCTTCCGAACCTCTACACGTTAGATCTTTCCA 492
Query 481 ACAACATGTTCTCCGGTGAAATCTACAACGACATCGGATTTTTCTCTAACCTTAGAATCC 540
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 493 ACAACATGTTCACCGGTGAAATCTACAACGACATCGGGGTTTTCTCTAACCTTAGAGTCC 552
Query 541 TCGATCTCGGCGGAAACGTCTTGACCGGCCATGTACCGGCCTATCTTGGAAACCTCTCAA 600
| |||||||| ||||| ||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 553 TTGATCTCGGTGGAAATGTCTTAACCGGCCATGTACCGGGCTATCTTGGAAACCTCTCAA 612
Query 601 GATTAGAGTTCCTAACATTGGCTTCAAACCAGTTCACCGGAGGTGTACCAGCGGAGTTAG 660
||||||||||| |||||||||||||||||||||| |||||||||||||| | ||| ||||
Sbjct 613 GATTAGAGTTCTTAACATTGGCTTCAAACCAGTTAACCGGAGGTGTACCGGTGGAATTAG 672
Query 661 GGAAGATGAAAAACTTGAAATGGATATACTTGGGATACAACAATCTCTCCGGAGAAATCC 720
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 673 GGAAGATGAAAAACTTGAAATGGATATACTTGGGATACAACAATCTCTCAGGAGAAATCC 732
Query 721 CTTACCAAATCGGTGGCTTATCCTCTCTCAACCACCTTGATCTTGTGTACAACAATCTCT 780
|||||||||||||||| ||||||||||| |||||||||||||| || |||||||||||||
Sbjct 733 CTTACCAAATCGGTGGGTTATCCTCTCTTAACCACCTTGATCTCGTCTACAACAATCTCT 792
Query 781 CTGGACCAATACCTCCTTCACTAGGAGACTTAAAGAATCTTGAGTACATGTTTCTCTACC 840
||||||| ||||||||||||||||| ||||| ||||| |||||||| ||||||||||| |
Sbjct 793 CTGGACCGATACCTCCTTCACTAGGTGACTTGAAGAAGCTTGAGTATATGTTTCTCTATC 852
Query 841 AAAACAAGCTCTCCGGTCCGATCCCACCGTCCATCTTCTCCCTCCAAAACCTCATCTCTC 900
|||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||
Sbjct 853 AAAACAAGCTCTCCGGTCAGATCCCACCGTCCATCTTCTCCCTCCAAAACCTAATTTCTC 912
Query 901 TCGACTTTAGCGATAACTCGCTCTCGGGAGAGATCCCTGAGCTCTTGGCTCAGATGCAGA 960
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 913 TCGACTTTAGCGATAACTCGCTCTCGGGAGAGATCCCTGAGCTCGTGGCTCAGATGCAAA 972
Query 961 CCTTGGAGATTCTCCACCTCTTCTCCAATAACTTAACCGGAACAATTCCAAAAGGAGTAA 1020
||||||||||||||| |||||||| ||||||||||| |||| ||||||| |||||||||
Sbjct 973 GCTTGGAGATTCTCCATCTCTTCTCTAATAACTTAACAGGAAAAATTCCAGAAGGAGTAA 1032
Query 1021 CTTCTTTGCCACGTCTTCAAGTTCTTCAGCTCTGGTCTAACAGATTATCTGGCGGAATTC 1080
|||||||||||||||| ||||||||||||| ||||| |||||||| || || |||||||
Sbjct 1033 CTTCTTTGCCACGTCTAAAAGTTCTTCAGCTTTGGTCAAACAGATTTTCCGGTGGAATTC 1092
Query 1081 CGGCGAATCTTGGGAAACATAACAACCTTACTGTTCTTGATCTTTCTACCAACAATCTCA 1140
|||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1093 CGGCAAATCTTGGGAAACATAACAATCTCACTGTTCTTGATCTTTCTACCAACAATCTCA 1152
Query 1141 CCGGAAAACTCCCTGACACTCTTTGTGACTCTGGCCATCTCACTAAGCTCATCCTCTTCT 1200
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1153 CCGGAAAACTCCCTGACACTCTTTGTGATTCTGGCCATCTCACTAAGCTCATCCTCTTCT 1212
Query 1201 CTAACTCTCTACACAGCCAAATCCCAACGAGTTTGGGCGCGTGCTC-GAGCTTAGAACGT 1259
||||||||||| |||||||||||||| ||||||||||| ||| || ||||||||||||
Sbjct 1213 CTAACTCTCTAGACAGCCAAATCCCACCGAGTTTGGGCATGTG-TCAGAGCTTAGAACGC 1271
Query 1260 GTGAGGCTTCAGAAA-AATGGCTTCTCAGGCGATTTACCTCGAGGTTTCACCGAGTTACA 1318
||||||||||| ||| |||||||| |||||| | |||||||||||||||||| |||| ||
Sbjct 1272 GTGAGGCTTCA-AAACAATGGCTTTTCAGGCAAGTTACCTCGAGGTTTCACCAAGTTGCA 1330
Query 1319 ACTCGTTAACTTTTTGGACTTATCAAACAACAACCTCCAAGGTAACATCAGCACATGGGA 1378
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 1331 ACTCGTTAACTTTTTGGACTTATCCAACAACAACCTCCAAGGTAACATCAACACATGGGA 1390
Query 1379 CATGCCACAACTTGAGATGCTAGACCTCAGCCG-GAACAACTTCTCCGGTGAATTACCTG 1437
||||||||||||||||||| |||||||||| | |||||| |||| |||||||||||| |
Sbjct 1391 CATGCCACAACTTGAGATGTTAGACCTCAG-TGTGAACAAATTCTTCGGTGAATTACCGG 1449
Query 1438 ATCTTTCGAGAAGCAAAAGACTCAAGAAGCTCGATTTATCAAGAAACAGAATCTCTGGAA 1497
|| |||| ||||||||||||||||||||||||||||||||| | |||| ||||||||||
Sbjct 1450 ATTTTTCTAGAAGCAAAAGACTCAAGAAGCTCGATTTATCACGGAACAAAATCTCTGGAG 1509
Query 1498 TGTTTCCGCTACGGCTCATGGCCTTTCCGGAACTTATGGACATGGATTTAAGTGAGAACG 1557
|| |||| | | |||||||| | ||||||||| | ||||| ||||||||||||||||||
Sbjct 1510 TGGTTCCACAAGGGCTCATGACGTTTCCGGAAATAATGGATTTGGATTTAAGTGAGAACG 1569
Query 1558 AGATCACTGGAGTGATCCCAAGTGAGTTGTCTTCTTGCAAGAATCTAGTGAATCTTGACT 1617
| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1570 AAATCACTGGAGTGATCCCAAGGGAGTTGTCTTCTTGCAAAAATCTAGTGAATCTTGACT 1629
Query 1618 TGAGCCACAACAATCTCACCGGGGAGATCCCTTTGAGTTTCTCAGAATTCCCAGTTCTCA 1677
|||||||||||||| | ||||| |||||||||| ||||||| ||||||||| ||||||||
Sbjct 1630 TGAGCCACAACAATTTTACCGGAGAGATCCCTTCGAGTTTCGCAGAATTCCAAGTTCTCA 1689
Query 1678 GCGATCTTGATTTGTCGTGCAACCGATTATCTGGCGAGATTCCGAAGAATCTAGGGAACA 1737
|||||||||||||||| ||||||| |||||| ||||||||||||||||||||||| ||||
Sbjct 1690 GCGATCTTGATTTGTCATGCAACCAATTATCAGGCGAGATTCCGAAGAATCTAGGAAACA 1749
Query 1738 TCGAGTCTCTCGTTCAAGTCAACATCTCTCATAATCTTCTTCACGGAAGCTTACC-TCCA 1796
| |||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1750 TTGAGTCTCTTGTTCAAGTCAACATCTCTCATAATCTTCTTCACGGAAGCTTACCTTTC- 1808
Query 1797 ACCGGAGCTTTCCTTGCCATAAACGCAACAGCAGTTGCGGGTAATATCGATCTTTGCAGC 1856
||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||| |||
Sbjct 1809 ACCGGAGCTTTTCTTGCCATAAACGCAACAGCAGTTGAGGGTAACATCGATCTTTGTAGC 1868
Query 1857 GCAAATTCCGCTAGCGGTTTACATCCTTGCAAGGTTGTAAGAAAGAGAAGTACAAAGAGT 1916
| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 1869 GAAAATTCCGCTAGCGGTTTACGTCCTTGCAAGGTTGTAAGAAAGAGAAGTACGAAGAGT 1928
Query 1917 TGGTGGTTTATCATCACTTCAACCGTTGTAGCTTTCTTGGCTGTCCTTGTCTCTGGTTTC 1976
|||||||| ||||||||||||||| ||| |||||||||||||||||| ||||||||||||
Sbjct 1929 TGGTGGTTAATCATCACTTCAACCTTTGCAGCTTTCTTGGCTGTCCTAGTCTCTGGTTTC 1988
Query 1977 TTTATCGCTCTCGTCTTTCAAAAAACGCGTAACGTTTTGGAGGTCAAGAAAGTGGAACAA 2036
||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1989 TTTATCGTTCTCGTCTTTCAAAGAACGCATAACGTTTTGGAGGTCAAGAAAGTGGAACAA 2048
Query 2037 GAAGATGGTACAAAGTGGGAAACTCAATTCTTCGATTCAAGATTCATGAAATCGTTTACG 2096
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2049 GAAGATGGTACAAAGTGGGAAACTCAATTCTTCGATTCAAAATTCATGAAATCGTTTACG 2108
Query 2097 GTGAACGCGATTGTATCGTCTCTTAATGAACAAAACGTTCTTGTGGATAAAACCGGCGT- 2155
|||||| | ||| ||||||||||||| || |||||||||||||||||||||| ||||||
Sbjct 2109 GTGAACACAATTCTATCGTCTCTTAAGGACCAAAACGTTCTTGTGGATAAAAACGGCGTG 2168
Query 2156 CAAGTTCGTTGTAAAGGAGGTCAAGAAGTATGATTCTCTTCCCGAGATGATATCTGACAT 2215
| | |||||||| ||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 2169 C-ATTTCGTTGTTAAGGAGGTCAAGAAGTATGATTCTCTTCCCGAGATGATATCCGATAT 2227
Query 2216 GAGGAAACTTTCTGAGCACAAAAACATTCTTAAGATAGTTGCTACGTGCCGGTCGGAAAA 2275
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2228 GAGGAAACTTTCTGACCACAAAAACATTCTTAAGATAGTTGCTACGTGCCGGTCGGAGAC 2287
Query 2276 AGAGGCCTACTTGATACACGAGGACGTCGAAGGGAAACGGCTTAGCCAGATTTTGAA-TG 2334
| ||| ||||||||||| ||||||||||||||||||||||| |||||| |||| || ||
Sbjct 2288 TGTGGCGTACTTGATACATGAGGACGTCGAAGGGAAACGGCTGAGCCAGGTTTT-AAGTG 2346
Query 2335 GTTTGAGTTGGGAGAGACGGAGGAAGATTATGAAGGGAATCGTAGAAGCTCTTCGGTTTT 2394
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2347 GTTTGAGTTGGGAGAGACGGAGGAAGATTATGAAGGGAATCGTCGAAGCTCTTCGGTTTT 2406
Query 2395 TACATTGCCGGTGTTCTCCAGCGGTTGTTGCCGGTAATTTATCGCCGGAGAATATTGTCA 2454
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2407 TACATTGCCGGTGTTCTCCAGCTGTTGTTGCCGGTAATTTATCGCCGGAGAATATTGTCA 2466
Query 2455 TCGACGTCAAGGATCAACCAAGGCTTTGTCTCGGTCTTCCGGGCTTACTTTGCATGGACT 2514
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2467 TCGACGTCACCGATGAACCAAGGCTTTGTCTCGGTCTTCCGGGCTTACTTTGCATGGA-T 2525
Query 2515 -CTGCTTACATGGCCCCAGAAACGAGAGAGCACAAGGAGATGACAAGTAAAAGTGACATC 2573
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2526 GCTGCTTACATGGCCCCAGAAACGAGAGAGCACAAGGAGATGACAAGTAAAAGTGACATC 2585
Query 2574 TATGGTTTTGGAATCCTCCTCCTTCATCTCCTCACCGGTAAAAACTCCTCCGGTGATGAG 2633
|||||||||||||||||||||||||||||||||||||||||| |||||| || |||||
Sbjct 2586 TATGGTTTTGGAATCCTCCTCCTTCATCTCCTCACCGGTAAATGTTCCTCCAGTAATGAG 2645
Query 2634 GACATAGCATCTGAAGTTAACGGAAGTTTAGTCAACTGGGCTAGATATTCATATTCGAAT 2693
||||| | ||||| ||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 2646 GACATCGAATCTGGAGTTAACGGAAGTTTGGTCAAGTGGGCTAGATATTCGTATTCGAAT 2705
Query 2694 TTCCATATCGACACGTGGATCGACTCATCCATCGACATGTCAGTGCATAAGCGTGAGATT 2753
| |||||||||||||||||||||||||||||| |||| ||||||||| |||| ||||||
Sbjct 2706 TGCCATATCGACACGTGGATCGACTCATCCATTGACACATCAGTGCATCAGCGCGAGATT 2765
Query 2754 GTCCATGTCATGAACTTAGCTTTGAACTGTACGGCCATTGATCCGCAAGAGAGGCCTTGC 2813
|||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 2766 GTCCATGTTATGAACTTGGCTTTGAAATGTACGGCCATTGATCCGCAAGAGAGGCCATGC 2825
Query 2814 ACCAAGAACGTGTTACAAGCATTAGAGTCTACCTCATCCTCAAGTTCTTCTTGCACTACT 2873
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2826 ACCAATAACGTGTTACAAGCATTAGAGTCTACCTCATCGTCAAGTTCTTCTTGCACTACT 2885
Query 2874 TATTTTTCAAAGATACCATCGTTGGCCTGACAATTTTGGCTTCGTTTGAC 2923
||||| |||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 2886 TATTTGTCAAAGATACTATCGTTGGCCTGACAATTCTGGCTTCGTTTGAC 2935
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 145283466928
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5