BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932757
Length=791
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25810.1 | Symbols: TIP4;1 | tonoplast intrinsic protein 4;1... 1164 0.0
> AT2G25810.1 | Symbols: TIP4;1 | tonoplast intrinsic protein 4;1
| chr2:11012506-11014170 FORWARD LENGTH=1166
Length=1166
Score = 1164 bits (630), Expect = 0.0
Identities = 739/792 (93%), Gaps = 5/792 (1%)
Strand=Plus/Plus
Query 3 TTAAACTCATTCTAAAGCCATGAAGAAGATTGAGTTAGGTCACCATAGTGAGGCGGCTAA 62
||||| |||||| ||||||||||||||||| |||||||| |||||||| || ||||||||
Sbjct 134 TTAAATTCATTCAAAAGCCATGAAGAAGATCGAGTTAGGGCACCATAGCGAAGCGGCTAA 193
Query 63 GCCAGG-CTGCATTAAAGCCCTTATTGTCGAATTCATCACCACCTTTCTCTTTGTCTTCG 121
|| || ||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 194 ACC-GGACTGCATTAAAGCCCTCATTGTCGAATTCATCACTACCTTTCTCTTTGTCTTCG 252
Query 122 CGGGCGTTGGATCCGCCATGGCCACCGACAGTTTAGTCGGAAACACATTGGTGGGACTTT 181
| || |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 253 CTGGTGTTGGATCTGCCATGGCCACTGACAGTTTAGTCGGAAACACATTGGTGGGACTTT 312
Query 182 TCGCGGTCGCTGTGGCTCATGCATTAGTTGTGGCGGTAATGATATCTGCCGGCCATATCT 241
|||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 313 TCGCGGTCGCGGTGGCTCATGCATTCGTTGTGGCGGTAATGATATCTGCGGGCCATATCT 372
Query 242 CCGGTGGCCACCTCAACCCCGCGGTCACCCTCGGTCTACTTTTGGGTGGCCATATCAGCG 301
|||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||
Sbjct 373 CCGGTGGCCACCTCAACCCCGCCGTCACCCTCGGTCTACTCTTGGGTGGCCACATCAGCG 432
Query 302 TCTTCCGCGCATTCCTCTATTGGATTGATCAATTGTTGGCCTCCTCCGCAGCATGCTTCC 361
| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 TATTCCGTGCATTCCTTTATTGGATTGATCAATTGTTGGCCTCCTCCGCAGCATGCTTCC 492
Query 362 TCCTCAGTTACCTCACCGGAGGAATGGCAACTCCGGTTCACACATTGGCAATTGGAGTGA 421
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 493 TCCTCAGTTACCTCACCGGAGGAATGGGAACTCCGGTTCACACATTGGCAAGTGGAGTGA 552
Query 422 GTTACACTCAAGGGATCATATGGGAGATAATCTTAACATTCTCACTTCTCTTCACAGTCT 481
||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| ||||
Sbjct 553 GTTACACGCAAGGGATCATATGGGAGATCATCTTAACATTTTCACTTCTCTTCACTGTCT 612
Query 482 ACGCCACTATGGTGGATCCCAAGAAAGGATCCCTTGATGGACTAGGTCCACTTCTCACAG 541
|||||||||| |||||||| |||||||||||||||||||| | || |||||||||||||
Sbjct 613 ACGCCACTATTGTGGATCCGAAGAAAGGATCCCTTGATGGGTTCGGCCCACTTCTCACAG 672
Query 542 GATTCGTCGTTGGAGCCAACATCCTAGCAGGAGGTGCCTTTTCGGGTGCCTCTATGAACC 601
|||| |||||||||||||||||||| ||||||||||||||||| || ||||| |||||||
Sbjct 673 GATTTGTCGTTGGAGCCAACATCCTTGCAGGAGGTGCCTTTTCTGGCGCCTCCATGAACC 732
Query 602 CCGCCCGGTCTTTTGGTCCGGCTTTGGTCTCTGGAAATTGGACTGACCATTGGGTATATT 661
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 733 CCGCCCGGTCTTTTGGTCCCGCTTTGGTCTCTGGAAACTGGACTGACCATTGGGTATATT 792
Query 662 GGGTTGGACCGTTGATTGGTGGTGGACTCGCCGGTTTCATCTACGAGAACGTCCTCATTG 721
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 793 GGGTTGGACCGTTGATCGGTGGTGGACTCGCCGGTTTCATCTACGAGAATGTCCTCATTG 852
Query 722 ACCGTCCACATGTCCCAGTTGCTGACGATGAGCAACCATTATTGGATTAAATGTGTT-GA 780
||||||||||||||||||| |||||||| ||||||||||| ||| |||||||||||| ||
Sbjct 853 ACCGTCCACATGTCCCAGTCGCTGACGACGAGCAACCATTGTTGAATTAAATGTGTTTGA 912
Query 781 ATA-TGTGTTAT 791
| | |||| |||
Sbjct 913 A-ACTGTGCTAT 923
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38479356602
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5