BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932769
Length=433
Score E
Sequences producing significant alignments: (Bits) Value
ATMG00630.1 | Symbols: ORF110B | hypothetical protein | chrM:18... 95.3 4e-19
AT2G07806.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 67.6 9e-11
AT2G07682.1 | Symbols: | transposable element gene | chr2:3292... 65.8 3e-10
AT2G07787.1 | Symbols: | unknown protein; Has 35333 Blast hits... 58.4 6e-08
AT2G07798.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 56.5 2e-07
AT2G07785.1 | Symbols: | NADH dehydrogenase family protein | c... 54.7 7e-07
> ATMG00630.1 | Symbols: ORF110B | hypothetical protein | chrM:183111-183443
FORWARD LENGTH=333
Length=333
Score = 95.3 bits (51), Expect = 4e-19
Identities = 53/54 (98%), Gaps = 0/54 (0%)
Strand=Plus/Plus
Query 311 GTTGCCCATCTCCCATTTAATCGGAACGGAAGTCAGAAATCTAATATCTGTACG 364
||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 24 GTTGCCCATCTCCCATTTAATCGGAACGGAAGTAAGAAATCTAATATCTGTACG 77
> AT2G07806.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; Has 2 Blast hits
to 2 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 1; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr2:3484830-3489421 FORWARD LENGTH=642
Length=642
Score = 67.6 bits (36), Expect = 9e-11
Identities = 36/36 (100%), Gaps = 0/36 (0%)
Strand=Plus/Minus
Query 112 TTCATATTGTTACAAATGAACTCGTAGGCTCTTCCT 147
||||||||||||||||||||||||||||||||||||
Sbjct 215 TTCATATTGTTACAAATGAACTCGTAGGCTCTTCCT 180
> AT2G07682.1 | Symbols: | transposable element gene | chr2:3292516-3297403
REVERSE LENGTH=4888
Length=4888
Score = 65.8 bits (35), Expect = 3e-10
Identities = 35/35 (100%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 365 AGCAAGTTTTTGTATCAGGAAAGAGGCAAGGACAG 399
|||||||||||||||||||||||||||||||||||
Sbjct 4761 AGCAAGTTTTTGTATCAGGAAAGAGGCAAGGACAG 4795
> AT2G07787.1 | Symbols: | unknown protein; Has 35333 Blast hits
to 34131 proteins in 2444 species: Archae - 798; Bacteria
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:3476928-3478704
FORWARD LENGTH=1254
Length=1254
Score = 58.4 bits (31), Expect = 6e-08
Identities = 34/35 (97%), Gaps = 1/35 (3%)
Strand=Plus/Minus
Query 40 TTTGCACCAGGTTTATAAAGACTGGTTCGAAAGGA 74
||| |||||||||||||||||||||||||||||||
Sbjct 826 TTT-CACCAGGTTTATAAAGACTGGTTCGAAAGGA 793
> AT2G07798.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:ATMG01220.1);
Has 3 Blast hits to 3 proteins in 1 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:3357619-3361102
FORWARD LENGTH=1480
Length=1480
Score = 56.5 bits (30), Expect = 2e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Minus
Query 281 GTCATGGAAAGATATCGACGCAATACAAAG 310
||||||||||||||||||||||||||||||
Sbjct 324 GTCATGGAAAGATATCGACGCAATACAAAG 295
> AT2G07785.1 | Symbols: | NADH dehydrogenase family protein |
chr2:3348003-3348904 FORWARD LENGTH=902
Length=902
Score = 54.7 bits (29), Expect = 7e-07
Identities = 34/36 (94%), Gaps = 1/36 (3%)
Strand=Plus/Minus
Query 45 ACCAGGTTTATAAAGACTGGTTCGAAAGGAGACGTc 80
||||||||||||||||||||||||||||| | ||||
Sbjct 593 ACCAGGTTTATAAAGACTGGTTCGAAAGGCG-CGTC 559
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20559509341
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5