BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932772
Length=1795
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25870.1 | Symbols: | haloacid dehalogenase-like hydrolase ... 2750 0.0
> AT2G25870.1 | Symbols: | haloacid dehalogenase-like hydrolase
family protein | chr2:11031115-11034454 FORWARD LENGTH=1951
Length=1951
Score = 2750 bits (1489), Expect = 0.0
Identities = 1697/1799 (94%), Gaps = 7/1799 (0%)
Strand=Plus/Plus
Query 3 CTCGCCTCC--GTCTCTCCAATGCTCTCGCGTGTCTACCCAATCCTCCGCCATAACCGTC 60
||||||||| ||||||||||||||||| ||||||| ||||| ||||||| |||| |||
Sbjct 25 CTCGCCTCCGTGTCTCTCCAATGCTCTCTCGTGTCTGCCCAACCCTCCGCTATAATCGTA 84
Query 61 TCTTCTCTGCAGAAGCGCGTGAAATGCCACGCGCCACTCTCCTTCTCCTCCAACCCAACT 120
||| ||||| | ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 85 TCTGGTCTGCTCATGCGCGTGAAATGCCACGCGCCACCCTCCTTCTCCTCCAACCCAACT 144
Query 121 TCCTACGCTTTTCCCCGAGAACTCCTCCTCTGAATCGTCTCGATGTTTCTTCGTCCGAGT 180
|| | | || |||||| | |||| ||| | ||||||||||||||||| |||| || ||||
Sbjct 145 TCTTCCACTCTTCCCCCAAAACTGCTCTTGTGAATCGTCTCGATGTTACTTCATCGGAGT 204
Query 181 TTTCTTCCATGTTCCGTCGGAGATTCCACGCTTTACGCAGCACCGTAGGAGACTGGACG- 239
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 205 TTTCTTCCATGTTCCGTCGGAGCTTCCACGCTTTACGCAGCACCGTAGGAGACTGGA-GA 263
Query 240 AAGCTTCCGAAACCTCCGGGTCGGGTTTTCGCGGAGAGGAGAGAATATAGGAAGACTAGG 299
|||||||||||||| ||||||| |||||| ||||||||||||||||| ||||||| |||
Sbjct 264 AAGCTTCCGAAACCGCCGGGTCAGGTTTTTGCGGAGAGGAGAGAATACAGGAAGATTAGA 323
Query 300 AGGAGAACGCCGAAGAAGAAACAGGAATTGGAGCTTAGTGTTAGCATCTGCATCGAAGAA 359
|||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 324 AGGAGAGCTCCGAAGAAGAAACAGGAATTGGAGCTTAGTGTTAGTATCTGCATCGAAGAA 383
Query 360 CAGCTTCCTGATGATCTTGAGATTCAGAATATTGCGGAAATGCTTCGTCTCAATGTGCCT 419
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||
Sbjct 384 CAGCTTCCTGATGATCTCGAGATTCAGAATATTGCAGAAATGCTTCGTCTCAATGTACCT 443
Query 420 ATGGCAATGACATTGGCTTTCAATGGTTTGAAAGATTCCAAGTATAAAACAAGAGAGACT 479
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 444 ATGGCAATGACATTGGCTTTCAATGGTTTGAAAGATTCAAAGTATAAAACAAGAGAGACT 503
Query 480 GATATAGAAGATCTTGGTGGGTACGAAACTGTCGAATTATCGGTCATGCTTTGTAATGAT 539
||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 504 GATATAGAAGATCTTGGTGGGTATGAAACTGTTGAATTATCGGTGATGCTTTGTAATGAT 563
Query 540 GATTTCATTTGTAAACTCAACAAAGAGTGGAGAGGTGAAGATCATGCTACAGATGTGCTT 599
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 564 GATTTTATTTGTAAACTCAACAAAGAGTGGAGAGGTGAAGATCATGCTACTGATGTGCTT 623
Query 600 TCCATGTCACAACATGTCCCTGAATTGAAGCTTCCAGTGCTTATGATGGGAGATATTGTC 659
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||| | |||
Sbjct 624 TCCATGTCACAACATGTCCCTGAACTGAAGCTTCCAGTACTTATGATGGGAGATCTCGTC 683
Query 660 ATTTCTGTTGAGACAGCTGCAAGGCAGGCTGCAGAGAGAGGGCACACTCTTCTTGATGAG 719
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 684 ATTTCTGTTGAGACAGCTGCAAGGCAAGCTGCAGAGAGAGGGCATACTCTTCTTGATGAA 743
Query 720 ATACGTATTCTTGTGATTCATGGGTTGCTACACCTACTGGGCTTTGATCATGAGATCAGC 779
||||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 744 ATACGCATTCTTGTGATTCATGGGTTGCTACATCTACTGGGATTTGATCATGAAATCAGC 803
Query 780 AACGAGGCTGAGCAAGAAATGGAGGAGGAGGAGGAGTTGTTGCTAAAAAGCCTTGGGTGG 839
|||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||
Sbjct 804 GACGAGGCTGAGCAAGAAATGGAAGAGGAAGAGGAGTTGTTGCTAAAAAACCTTGGGTGG 863
Query 840 AAAGGAAAAGGACTCATTCAGAGTGCATATGACATTGAAAAAACAGCTAAACCTCAGCTG 899
|||||||||||||||||||||||||||||||||||| |||||||| ||| | ||||| |
Sbjct 864 AAAGGAAAAGGACTCATTCAGAGTGCATATGACATTCAAAAAACAACTACAGTTCAGCCG 923
Query 900 GAGAAATCAGATGACAGGAAGGAAGGGGATGGCCTAAGATTGTACAGACCAAAGTTCTCC 959
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 924 GAGAAATCAGATGACAGGAAGGAAGGGGATGGCCTAAGATTGTACAAACCAAAGTTCTCC 983
Query 960 TATATATTCTGTGATATGGATGGCACACTGCTCAACAGTAAAAGTCAGATTTCGGAGGCA 1019
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 984 TATATATTCTGTGATATGGATGGTACACTGCTTAACAGTAAAAGTCAGATTTCGGAGGCA 1043
Query 1020 AATGCAAAAGCTTTAAAAGAAGCCATGCTGAGGGGACTTAAAGTAGTCATAGCTACGGGG 1079
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1044 AATGCAAAAGCTTTAAAAGAAGCCCTTCTGAGGGGACTTAAAGTAGTCATAGCTACGGGG 1103
Query 1080 AAGTCCCGCCCAGGTGCGATCAGAATCTTGAAGACGGCTGATCTAACTGGACCCGATGGC 1139
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1104 AAGTCCCGCCCAGGTGCGATCAGAATCTTGAAGACGGCTGATCTAACTGGATCCGATGGC 1163
Query 1140 ATTGTCTCAGAGTCCTCTCCAGGCGTTTTCGTTCAGGGCTTACTTGTCTATGGTAGACAG 1199
||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1164 ATTATCTCAGAGTCCTCTCCAGGCGTTTTCGTTCAGGGATTACTTGTCTATGGTAGACAA 1223
Query 1200 GGGAAAGAAGTTTATAGAGGATACTTGGACCGAGATGTCTGCAGAGAGACGTGTCTTTAC 1259
||||||||||| ||| ||||| |||| ||||||||||||||||||||||| ||||||||
Sbjct 1224 GGGAAAGAAGTGTATCGAGGAAACTTAGACCGAGATGTCTGCAGAGAGACCTGTCTTTAT 1283
Query 1260 TCTTTGGAGCATCGAATTCCTCTCATTGCATTCAGCCAGGATCGCTGCTTGACATTGTTT 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1284 TCTTTGGAGCATCGAATTCCTCTCATTGCATTCAGCCAGGATCGCTGCTTGACATTGTTT 1343
Query 1320 GACCACCCTCTTGTCGACTCTCTTCACACAATCTACAATGAGCCAAAGGCTGAAATCATA 1379
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1344 GACCACCCTCTTGTCGACTCTCTTCACACAATCTACAATGAGCCAAAGGCCGAAATTATA 1403
Query 1380 TCGTCGGTTGATCAACTTATAGCTGAAGCTGACATTCAGAAAGTGATATTTATGGACACA 1439
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1404 TCATCGGTTGATCAACTGATAGCTGAAGCTGACATTCAGAAAGTGATATTTATGGACACA 1463
Query 1440 ACCGAGGGGGTCTCATCTGTTATCCGTCCGTATTGGTCAGAAGCTACAGGCGATCGTGCT 1499
|||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1464 ACCGAGGGAGTCTCATCTGTTATCCGTCCGTATTGGTCAGAAGCTACAGGAGACCGTGCT 1523
Query 1500 AATGTTGTTCAAGCTCAATCAGACATGCTGGAAATCGTCCCACCAGGAACCTCCAAAGGG 1559
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1524 AATGTTGTTCAAGCTCAATCAGACATGCTAGAAATCGTCCCACCCGGAACCTCCAAAGGG 1583
Query 1560 AACGGTGTAAAAATGCTACTCAATCATTTGGGCGTTTCACCGGATGAGATAATGGCGATT 1619
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1584 AATGGTGTAAAAATGCTACTCAATCATTTGGGCGTTTCACCGGATGAGATAATGGCGATT 1643
Query 1620 GGAGATGGAGAAAACGACATAGAGATGCTGAAACTGGCCTCGTTGGGAGTTGCTCTGAGC 1679
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1644 GGAGATGGAGAAAATGACATAGAGATGCTGCAACTGGCCTCGTTGGGAGTTGCTCTGAGC 1703
Query 1680 AACGGTGCAGAAAAGACAAAGGCAGTGGCTGATGTGATCGGTGTGAGCAACGACCAAGAT 1739
|||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1704 AACGGTGCAGAAAAAACAAAGGCGGTGGCTGATGTGATTGGTGTGAGCAACGACCAAGAT 1763
Query 1740 GGTGTTGCTGATGCCATCTACCGCTACGCTTTCTGAGACTCCACCA---TATTTAAGTA 1795
||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 1764 GGTGTTGCTGATGCCATCTACCGCTACGCATTCTGAGACTCCACCACCATATTTAAGTA 1822
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88804764105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5