BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932778

Length=472
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G25890.1 | Symbols:  | Oleosin family protein | chr2:1103738...   664    0.0  


> AT2G25890.1 | Symbols:  | Oleosin family protein | chr2:11037380-11038126 
FORWARD LENGTH=747
Length=747

 Score =  664 bits (359),  Expect = 0.0
 Identities = 415/443 (94%), Gaps = 0/443 (0%)
 Strand=Plus/Plus

Query  30   CAACAACAACCAATAATGAAGAATCTCCACAAATCATCACCATCGACACGGCAGATAGTG  89
            ||||||||||||||||||| || ||||||  |||||||||||||||| ||||||||||||
Sbjct  83   CAACAACAACCAATAATGAGGAGTCTCCATGAATCATCACCATCGACTCGGCAGATAGTG  142

Query  90   AGATTCCTAACCGCAGCAACGATCGGCCTATCACTCCTGGTGCTCTCAGGACTAACACTA  149
            |||||| |||| ||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct  143  AGATTCGTAACGGCAGCTACGATCGGCCTATCACTCCTCGTGCTCTCAGGACTAACACTA  202

Query  150  ACCGGAACGGTGATTGGTTTGGTCGTAGCGACGCCGCTAATGGTTTTATTCAGCCCGGTG  209
            |||||||||||||| |||||| |||||||||||||| | |||||| | ||||||||||||
Sbjct  203  ACCGGAACGGTGATCGGTTTGATCGTAGCGACGCCGTTGATGGTTCTGTTCAGCCCGGTG  262

Query  210  TTGGTGCCGGCGGTGATAACGATGGGGCTTTTGACGATGGGATTCCTATTCTCTGGTGGT  269
            ||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct  263  TTGGTACCGGCAGTGATAACGATAGGGCTTTTGACGATGGGATTCCTATTCTCCGGTGGT  322

Query  270  TGTGGTGTGGCGGCAGCGACGGCGTTAACGTGGATTTATAAGTACGTTTCCGGAAAACAC  329
            ||||| ||||| ||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct  323  TGTGGGGTGGCAGCAGCTACGGCGTTAACGTGGATTTATAAGTACGTTACCGGAAAACAC  382

Query  330  CCGATGGGAGCGGATAAAGTGGATTACGCCAGGATGAGGATAGCGGAGAAAGCCAAAGAG  389
            ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct  383  CCGATGGGAGCGGATAAGGTGGATTACGCGAGGATGAGGATAGCGGAGAAAGCCAAAGAG  442

Query  390  TTGGGACATTATGCGCAGTCGCAGCCACAACAAACACACCAAACCACAACAACTACTCAT  449
            |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  443  TTGGGACATTATACGCACTCGCAGCCACAACAAACACACCAAACCACAACAACTACTCAT  502

Query  450  TAGAGTTTAATAATAATATGGAT  472
            |||||||||||||| ||||||||
Sbjct  503  TAGAGTTTAATAATTATATGGAT  525



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22454663709


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5