BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932794
Length=829
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17990.1 | Symbols: TRP1, pat1 | tryptophan biosynthesis 1 |... 804 0.0
AT5G18500.1 | Symbols: | Protein kinase superfamily protein | ... 115 6e-25
> AT5G17990.1 | Symbols: TRP1, pat1 | tryptophan biosynthesis 1
| chr5:5957213-5959905 FORWARD LENGTH=1676
Length=1676
Score = 804 bits (435), Expect = 0.0
Identities = 543/594 (91%), Gaps = 11/594 (2%)
Strand=Plus/Plus
Query 73 CAGGGATCTTAACTTTGGTCAACGCCGCAGATGATGGGTCCAGTAGTTTCAGAAAAACCA 132
||||||||||||||| | ||||||||| |||||||| ||||||||||| | ||| || ||
Sbjct 170 CAGGGATCTTAACTTCGTTCAACGCCGTAGATGATGCGTCCAGTAGTTGCGGAAGAAGCA 229
Query 133 ACCTGACCGGAGTTAGAATTTATCCGACATTGAGTCGGCGACGATTCTCATCGATCGGAG 192
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 230 ACTTGACCGGAGTTAGAATTTTTCCGACATTGAGTCGGCGACGATTCTCATCGATCGGAG 289
Query 193 TTGTGTCCCCAATTCGAGGAGATGCCCAATCTTCCTTTAGTCGCAGTTCTTTCGTTTGCT 252
||| ||||||||||| || ||||| |||||||||||||||||||| ||||||| |||||
Sbjct 290 CTGTTTCCCCAATTCGTGGGGATGCTCAATCTTCCTTTAGTCGCAGCTCTTTCGCTTGCT 349
Query 253 CTCAGAATCTTGGTTTGAGCGGTGGAATCAGTGGTTTCAGTGCACCTGAAGCTCTGCCAA 312
|||||||||| |||||||||||||| | ||| |||||| ||||||||||||||
Sbjct 350 CTCAGAATCTCGGTTTGAGCGGTGG----A----TTT-AGTGCAGCTGAAGCTCTGCCAC 400
Query 313 ATGTTTGTGAAAATGCCA-CTCTTTCTTCCATCAAATCTTTCAACCAGTTGATTGAGACT 371
|| ||||| |||||| | | | ||||||||| ||||||||||||||||||||||| ||
Sbjct 401 CTGCTTGTGCAAATGCTAGC-CCTTCTTCCATTAAATCTTTCAACCAGTTGATTGAAACC 459
Query 372 TTGATTGATCGGGTTGATCTATCTGAAGCTGAGGCTGAATCATCTCTCGAGTTTTTGCTG 431
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 460 TTGATTGATCGGGTTGATCTATCTGAAACTGAGGCTGAATCATCTCTTGAGTTTTTGCTG 519
Query 432 AACGAGGCAAACGAGGCACTAATTAGTGCCTTTCTGGTTCTCCTGAGAGCTAAAGGAGAG 491
|| |||||||||||||| || || ||||||||||| ||||| ||||||||||||||||||
Sbjct 520 AATGAGGCAAACGAGGCGCTGATCAGTGCCTTTCTAGTTCTTCTGAGAGCTAAAGGAGAG 579
Query 492 ACATACGAAGAAATTGTGGGGTTGGCTAGGGCAATGATGAAGCATGCCAGGAAAGTGGAA 551
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 580 ACATACGAAGAGATTGTGGGGTTAGCTAGGGCAATGATGAAGCATGCCAGGAAAGTGGAA 639
Query 552 GGATTAGTCGATGCTGTGGACATAGTTGGAATAGGTGGTGATGGAGCAAACACAGTCAAT 611
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 640 GGATTAGTTGATGCTGTGGACATAGTTGGAACAGGTGGTGATGGAGCAAACACAGTCAAT 699
Query 612 ATATCAACTGGATCTTCAATACTTGCTGCAGCTTGTGGTGCAAAAGTAGCAAAG 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 ATATCAACTGGATCTTCAATACTTGCTGCAGCTTGTGGTGCAAAAGTAGCAAAG 753
> AT5G18500.1 | Symbols: | Protein kinase superfamily protein
| chr5:6138489-6141630 FORWARD LENGTH=2007
Length=2007
Score = 115 bits (62), Expect = 6e-25
Identities = 64/65 (98%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 741 GTGCACAGAGACATTAAGTCTAGCAACATTCTGATTGATGACAAATTCAATTCTAAAATT 800
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1070 GTGCACAGAGACATTAAGTCTAGTAACATTCTGATTGATGACAAATTCAATTCTAAAATT 1129
Query 801 TCTGA 805
|||||
Sbjct 1130 TCTGA 1134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40388254188
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5