BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932797
Length=657
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25950.1 | Symbols: | Protein of unknown function (DUF1000)... 1020 0.0
> AT2G25950.1 | Symbols: | Protein of unknown function (DUF1000)
| chr2:11068644-11070661 FORWARD LENGTH=843
Length=843
Score = 1020 bits (552), Expect = 0.0
Identities = 602/627 (96%), Gaps = 0/627 (0%)
Strand=Plus/Plus
Query 13 ATTTGGTAAAATGTCGTGTACGCATGATCACAACTGCGAAGATCATGAGTGTTCTTCCGA 72
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 82 ATTGGGAAAAATGTCGTGTACGCATGATCACAACTGCGAAGATCATGAGTGTTCTTCCGA 141
Query 73 TTGGTCTCTCTACAAACACATTGATCTCTCCAAGGTTTCTGCTCTTAATGAATCTGTTTC 132
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 142 TTGGTCTCTCTACAAACACATTGATCTCTCCAAGGTTTCAGCTCTGAATGAATCTGTTTC 201
Query 133 GGGAAGTGCAAAATCAGTCTTCAAAGCATGGGAAGAGAGATTACAATCTTCTGGGGAGCA 192
||||||||||||||||||||||||||| |||||| || ||||||| ||||||||||||||
Sbjct 202 GGGAAGTGCAAAATCAGTCTTCAAAGCGTGGGAACAGCGATTACACTCTTCTGGGGAGCA 261
Query 193 TTTGGAGAGCAATGAGGGAGACCCTGAATTGCTTGTTTTTGTACCATTCACATCAGACGT 252
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 262 TTTGGAGAGCAATGAGGGAGACCCTGAATTGCTTGTTTTTGTACCATTTACATCAGACGT 321
Query 253 CAAGATCAAGAGCATATCAATTGTTGGTGGCCCTGAAGGAACAAGTCCTTCTAAGTTGAG 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 322 CAAGATCAAGAGCATATCAATTGTTGGTGGCCCTGAAGGAACAAGTCCTTCTAAGTTGAG 381
Query 313 AGTGTTTATCAATCGCGAAGGTATTGACTTCTCAGATGCTGAGAGTATGCAAGCTGTTCA 372
||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| |||||
Sbjct 382 AGTGTTTATCAATCGTGAAGGGATTGACTTCTCCGATGCTGAGAGTATGCAAGCCGTTCA 441
Query 373 GGAATGGGAGTTAGCTGAAAATTTGCAAGGAGTCTTAGAATACCAGACCAGGTATTCAAA 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 GGAATGGGAGTTAGCTGAAAATTTGCAAGGAGTCTTAGAATACCAGACCAGGTATTCAAA 501
Query 433 ATTCCAGAGTGTTGGAAACATTACATTGCATTTCCCTGAGAGCTTTGGAGGTGACACAAC 492
|||||||||||||||||||| || |||||||||||||||| |||||||||||||||||
Sbjct 502 GTTCCAGAGTGTTGGAAACATCACCCTGCATTTCCCTGAGAGTTTTGGAGGTGACACAAC 561
Query 493 TCAAATACGCTATATCGGGTTCAAAGGTGAAGCAACCCAGTTGAAAAGGGATGTTGTTGC 552
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 562 CCAAATACGTTATATCGGGTTCAAAGGTGAAGCAACCCAGTTGAAAAGAGATGTTGTTGC 621
Query 553 GACAATCGTATATGAGATTAGACCAAATCCTTCAGATCACAAGACAAAAGCTGAGACTGG 612
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 622 GACAATCGTATATGAGATTAGACCAAATCCTTCAGATCACAAGACAAAAGCCGAGACTGG 681
Query 613 TGGAGGGTTTTCACAAGTTGAGTGAAG 639
||| || |||||||||||||| |||||
Sbjct 682 TGGTGGTTTTTCACAAGTTGAATGAAG 708
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31747980904
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5