BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932811
Length=857
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40955.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1411 0.0
AT4G15096.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1395 0.0
> AT2G40955.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured
cell; BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT4G15096.1); Has 89 Blast hits to 89 proteins
in 21 species: Archae - 0; Bacteria - 3; Metazoa - 18;
Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 56
(source: NCBI BLink). | chr2:17093093-17095132 FORWARD LENGTH=2040
Length=2040
Score = 1411 bits (764), Expect = 0.0
Identities = 828/859 (96%), Gaps = 4/859 (0%)
Strand=Plus/Plus
Query 1 GACGTGGCTGAGTTGTGTGAGCAGTTAACATGTGACGAGTCTCATAAACCGAAGCAAAGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105 GACGTGGCTGAGTTGTGTGAGCAGTTAACATGTGACGAGTCTCATAAACCGAAGCAAAGA 1164
Query 61 CTATCTCCAAAGTCTTGGATGTTTAAGTATAGAAGGGACAATATGAAACTACACAGCCCT 120
||| ||||||||||||||||||||||||||||||||||| ||| || |||||||||||||
Sbjct 1165 CTAGCTCCAAAGTCTTGGATGTTTAAGTATAGAAGGGACCATAAGATACTACACAGCCCT 1224
Query 121 ACTATGTCCAGGAATGTGAGAATGGTGGTTTTCAGAAAAATGGAAGCAGAAGAAATGATT 180
|||||||| ||||||||||||||||| |||||||||||||||||||||| ||||| || |
Sbjct 1225 ACTATGTCTAGGAATGTGAGAATGGTTGTTTTCAGAAAAATGGAAGCAGCAGAAAGGAGT 1284
Query 181 CAACATTTGGTTACACACAGGTTTCATGAGGGTCCACTAGAAATGGATATTCAAGACTCT 240
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1285 CAACATTTGGTTACACACAGGTTTCATGTGGGTCCACTAGAAATGGATACTCAAGACTCT 1344
Query 241 GAAGTTGCTATCAGT-GAGGTTTTAAGAAGAGTGATGATGCTGTTCCAAAACAGTATTGT 299
||| ||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1345 GAAATTGGTATCA-TAGAGGTTTTAAGAAGAGTGATGATGCTGTTCCAAAACAGTATTGT 1403
Query 300 ACAAGCCAAGATGATGGTGACAAAGAGAAAGAAAACGTTTTACAAGTCTAGGAGATCCAA 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1404 ACAAGCCAAGATGATGGTGACAAAGAGAAAGAAAACGTTTTACAAGTCTAGGAGATTCAA 1463
Query 360 GTTCAAACATAGAGTCGCACCAAGAGCTTTACAATATGGTTTTGACGTCAAAATGAAGCA 419
||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1464 GTTCAAACATAGAGTTGTACCAAGAGCTTTACAATATGGTTTTGAAGTCAAAATGAAGCA 1523
Query 420 AAA-GTTGTCTACAGAGTATCCATGTTTGTTCTTGATCGGCAAGGAGGCAGAACTTGTTC 478
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1524 AAAGGTT-TCTACAGAGTATCCATGTTTGTTCTTGATCGGCAAGGAGGCAGAACTTGTTC 1582
Query 479 ATATTTTGCTTGGGTATAGGGACGTGATGTTTAACTTGAAGAAAAAGGGGAGATTTAGAC 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1583 ATATTTTGCTTGGGTATAGGGACGTGATGTTTAACTTGAAGAAAAAGGGGAGATTTAGAC 1642
Query 539 TCTTTCAGTCATTTTCTGAACAACTTCTCTTATGGCTGCGACATGATGCATTGCTAATAA 598
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1643 TCTTTCAGTCATTTTCTAAACAACTTCTCTTATGGCTGCGACATGATGCATTGCTAATAA 1702
Query 599 AACCGTTTCTGCTTAGTGATGAGAGGTTCCAAATAAAGCATAAATGGAGATCTAAGTTCA 658
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 1703 AACCGTTTCTGCTTAGTGATGAGAGGTTCCAAATAAAGCATACATGGAGAACTAAGTTCA 1762
Query 659 TACACTCAGTTTCAGCAATTGGTGTTGGGCATTATGAATATTCTATTTGGAAACAGAGTG 718
||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1763 TACACTCCGTTTCATCAATTGGTGTTGGGCATTATGAATATTCTATTTGGACACAGAGTG 1822
Query 719 ACAAAGGGACGCAACTCTTTTACAACAGGTGATTGGTTGTTTACAAGCTTGCAAGTGAGG 778
||||||||||||| |||||||||| |||| ||||||||||||||||||||| ||||||||
Sbjct 1823 ACAAAGGGACGCAGCTCTTTTACAGCAGGAGATTGGTTGTTTACAAGCTTGGAAGTGAGG 1882
Query 779 CCAAGAATGTTGTAGAGGTGTCTCAACGTGTGTATCAGCTTGTTAAACTGAAATTTGCCA 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1883 CCAAGAATGTTGTAGAGGTGTCTCAACGTGTGTATCAGCTTGTTAAACTGAAATTTGCCA 1942
Query 839 AAGACGAACGAAAGCTTGA 857
|||||||||||||||||||
Sbjct 1943 AAGACGAACGAAAGCTTGA 1961
> AT4G15096.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G40955.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr4:8620596-8622635 FORWARD LENGTH=2040
Length=2040
Score = 1395 bits (755), Expect = 0.0
Identities = 826/860 (96%), Gaps = 6/860 (1%)
Strand=Plus/Plus
Query 1 GACGTGGCTGAGTTGTGTGAGCAGTTAACATGTGACGAGTCTCATAAACCGAAGCAAAGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105 GACGTGGCTGAGTTGTGTGAGCAGTTAACATGTGACGAGTCTCATAAACCGAAGCAAAGA 1164
Query 61 CTATCTCCAAAGTCTTGGATGTTTAAGTATAGAAGGGACAATATGAAACTACACAGCCCT 120
||| ||||||||||||||||||||||||||||||||||| ||| || |||||| ||||||
Sbjct 1165 CTAGCTCCAAAGTCTTGGATGTTTAAGTATAGAAGGGACCATAAGATACTACAGAGCCCT 1224
Query 121 ACTATGTCCAGGAATGTGAGAATGGTGGTTTTCAGAAAAATGGAAGCAGAAGAAATGATT 180
|||||||| ||||||||||||||||| |||||||||||||||||||||| ||||| || |
Sbjct 1225 ACTATGTCTAGGAATGTGAGAATGGTTGTTTTCAGAAAAATGGAAGCAGCAGAAAGGAGT 1284
Query 181 CAACATTTGGTTACACACAGGTTTCATGAGGGTCCACTAGAAATGGATATTCAAGACTCT 240
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1285 CAACATTTGGTTACACACAGGTTTCATGTGGGTCCACTAGAAATGGATACTCAAGACTCT 1344
Query 241 GAAGTTGCTATCAGT-GAGGTTTTAAGAAGAGTGATGATGCTGTTCCAAAACAGTATTGT 299
||| ||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1345 GAAATTGGTATCA-TAGAGGTTTTAAGAAGAGTGATGATGCTGTTCCAAAACAGTATTGT 1403
Query 300 ACAAGCCAAGATGATGGTGACAAAGAGAAAGAAAACGTTTTACAAGTCTAGGAGATCCAA 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1404 ACAAGCCAAGATGATGGTGACAAAGAGAAAGAAAACGTTTTACAAGTCTAGGAGATTCAA 1463
Query 360 GTTCAAACATAGAGTCGCACCAAGAGCTTTACAATATGGTTTTGACGTCAAAATGAAGCA 419
||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1464 GTTCAAACATAGAGTTGTACCAAGAGCTTTACAATATGGTTTTGAAGTCAAAATGAAGCA 1523
Query 420 AAAG-TTGTCTACAGAGTATCCATGTTTGTTCTTGATCGGCAAGGAGGCAGAACTTGTTC 478
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1524 AAAGGTT-TCTACAGAGTATCCATGTTTGTTCTTGATCGGCAAGGAGGCAGAACTTGTTC 1582
Query 479 ATATTTTGCTTGGGTATAGGGACGTGATGTTTAACTTGAAGAAAAAGGGGAGATTTAGAC 538
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1583 ATATTTTGCTTGGGTATAGGGACATGATGTTTAACTTGAAGAAAAAGGGGAGATTTAGAC 1642
Query 539 TCTTTCAGTCATTTTCT-GAACAACTTCTCTTATGGCTGCGACATGATGCATTGCTAATA 597
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1643 TCTTTCAGTCATTTTCTAGA-CAACTTCTCTTATGGCTGCGACATGATGCATTGCTAATA 1701
Query 598 AAACCGTTTCTGCTTAGTGATGAGAGGTTCCAAATAAAGCATAAATGGAGATCTAAGTTC 657
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1702 AAACCGTTTCTGCTTAGTGATGAGAGGTTCCAAATAAAGCATACATGGAGAACTAAGTTC 1761
Query 658 ATACACTCAGTTTCAGCAATTGGTGTTGGGCATTATGAATATTCTATTTGGAAACAGAGT 717
|||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1762 ATACACTCCGTTTCATCAATTGGTGTTGGGCATTATGAATATTCTATTTGGACACAGAGT 1821
Query 718 GACAAAGGGACGCAACTCTTTTACAACAGGTGATTGGTTGTTTACAAGCTTGCAAGTGAG 777
|||||||||||||| |||||||||| |||| ||||||||||||||||||||| |||||||
Sbjct 1822 GACAAAGGGACGCAGCTCTTTTACAGCAGGAGATTGGTTGTTTACAAGCTTGGAAGTGAG 1881
Query 778 GCCAAGAATGTTGTAGAGGTGTCTCAACGTGTGTATCAGCTTGTTAAACTGAAATTTGCC 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1882 GCCAAGAATGTTGTAGAGGTGTCTCAACGTGTGTATCAGCTTGTTAAACTGAAATTTGCC 1941
Query 838 AAAGACGAACGAAAGCTTGA 857
||||||||||||||||||||
Sbjct 1942 AAAGACGAACGAAAGCTTGA 1961
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41794810304
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5