BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932812
Length=1442
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26000.2 | Symbols: BRIZ2 | zinc finger (C3HC4-type RING fin... 2396 0.0
AT2G27160.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 113 4e-24
> AT2G26000.2 | Symbols: BRIZ2 | zinc finger (C3HC4-type RING finger)
family protein | chr2:11081302-11085350 FORWARD LENGTH=1746
Length=1746
Score = 2396 bits (1297), Expect = 0.0
Identities = 1397/1443 (97%), Gaps = 15/1443 (1%)
Strand=Plus/Plus
Query 1 GTGAATCGTCTCTGTCCGATATGACTCAGACAGTTCATTTTTCCTCTGGAAACCCTAGAA 60
||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 116 GTGAATCCTCTCTCTCCGATATGATTCAGACAGTTCATTTTTCCTCTGGAAACCCTAGAA 175
Query 61 TCGGCGAGACTCGCGGCGTCATGCATCTATTTTCCGACGA--C-G--TCGT-TTCTTCTT 114
|||||||||||||||| |||||||||||| |||||||| | | | |||| |||||||
Sbjct 176 TCGGCGAGACTCGCGGTGTCATGCATCTAATTTCCGACAATGCTGTTTCGTCATCTTCTT 235
Query 115 CCTCCTCCTCCTCGAATCTCCCTATTGGAAGGAACCCTCTCGTTTGCGTTCTTGGGGTGC 174
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 CTTCCTCCTCCTCGAATCTCCCTATTGGAAGGAACCCTCTCGTTTGCGTTCTTGGGGTGC 295
Query 175 CCAACCACATGACTTATGCAGATTTTTGCCAGTTCTGCGGCTCCTTCATTCACCACATAC 234
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 296 CCAACCACATGACATATGCAGATTTTTGCCAGTTCTGCGGCTCCTTCATTCAGCACATAC 355
Query 235 TCGAGATGCGAACCGTCAGGAATGATGACATTGAAAATAGATACAGCATTTTGATTAGGT 294
| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 356 TGGATATGCGAACCGTCAGGAATGATGACATTGAAAATAGATACAGCATTTTGATAAGGT 415
Query 295 TTGATAGTCAGGAATCTACCGATACATTCTTCCACCATTTTAGAGGGAAACAGTTCAACT 354
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 416 TTGATAGTCAGGAATCTACCGATACATTCTTCCAGCATTTCAGAGGGAAACAGTTCAACT 475
Query 355 CTCTCGAGGAAGATCTCTGTCGCCTGCTTTTTACTCTTGATGTTCAGTTTACCGGTTATA 414
|||| || |||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 476 CTCTGGACGAAGATGTCTGTCGCCTGCTTTTTGCTCTTGATGTTCAGTTTACCGGTTATA 535
Query 415 GTGGATCCATTGACCATACACAGCCTTCTGCTGCTGGCCCAATAGAGCAACCTACTTGCC 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 GTGGATCCATTGACCATACACAGCCTTCTGCTGCTGGCCCAATAGAGCAACCTACTTGCC 595
Query 475 CAGTGTGTCTTGAGAGATTGGACCAAGACACAGGTGGCATTCTCACAACCATGTGCAATC 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 CAGTGTGTCTTGAGAGATTGGACCAAGACACAGGTGGCATTCTCACAACCATGTGCAATC 655
Query 535 ATTCTTTTCATTGTTCATGTATTTCTAATTGGCCAGATTCTTCTTGCCCAGTTTGTCGAT 594
|||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 ATTCCTTCCATTGCTCATGTATTTCTAATTGGCCAGATTCTTCTTGCCCAGTTTGTCGAT 715
Query 595 ATTGCCAACAGCAACCTGAAAATTCAGTATGTTGTGTTTGCCAAACAACGGAGAATCTCT 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 ATTGCCAACAGCAACCTGAAAATTCAGTATGTTGTGTTTGCCAAACAACGGAGAATCTCT 775
Query 655 GGATGTGTGTTATCTGTGGGGTTGTTGGCTGCGGAAGGTACAAGGAAGGACATGCCAGAA 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 GGATGTGTGTTATCTGTGGGGTTGTTGGCTGCGGAAGGTACAAGGAAGGACATGCCAGAA 835
Query 715 GACACTGGGAGGAGACAGAGCATTGCTATTCACTTGAGCTTGAAACACAACGTGTTTGGG 774
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 GGCACTGGGAGGAGACAGAGCATTGCTATTCACTTGAGCTTGAAACACAACGTGTTTGGG 895
Query 775 ATTATGCTGGTGACAATTATGTTCACCGGCTTATTCAATCCAAAACTGATGGCAAGCTAG 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 ATTATGCTGGTGACAATTATGTTCACCGGCTTATTCAATCCAAAACTGATGGCAAGCTAG 955
Query 835 TGGAGTTGAATTCTCATGGAAGTCTGAGCAAGGATGGTTGTGGAAGCTGTGAATATTCTG 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 TGGAGTTGAATTCTCATGGAAGTCTGAGCAAGGATGGTTGTGGAAGCTGTGAATATTCTG 1015
Query 895 ACAGTGGAATGACTGATGCTCTCCTGAACAGCAAAGTGGACATGATCATTAGTGAGTACA 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 ACAGTGGAATGACTGATGCTCTCCTGAACAGCAAAGTGGACATGATCATTAGTGAGTACA 1075
Query 955 ACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAATATTTTGAAAAGTTGCTACAAA 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 ACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAATATTTTGAAAAGTTGCTACAAA 1135
Query 1015 ATGTCAAAGAGGAAACGGAACAGAAAGTCTCAGAAGCTGCGAGCAAGGCGATAAGCCAGA 1074
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 1136 ATGTCAAAGAGGAAACGGAACAGAAAATCTCAGAAGCTGCGAGCAAGGCAATAAGCCAGA 1195
Query 1075 GACTGCAGAAGCTGCAAACCAGGTTTGACAGATGTGTCAAAGAGAAGCAATTTCTTGAAG 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 GACTGCAGAAGCTGCAAACCAGGTTTGACAGATGTGTCAAAGAGAAGCAATTTCTTGAAG 1255
Query 1135 ATTTGAACGAAAATCTTGTGAAAAATAAGGACGTATGGAGCACCAAGATTACAGAAATGG 1194
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 ATTTGAACGAAAATCTTGTGAAAAATAAGGACGTATGGAGCACCAAGATTACAGAAATGA 1315
Query 1195 AAGAAAGGGAGAAGAAGGCAGTTCGGGCAAAAGATGAAAAGATTCAGGGCTTAGAAGAAC 1254
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1316 AAGAAAGGGAGAAGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGAAC 1375
Query 1255 AGCTTGGAAAACTAATGGCCCAAATGGATGGTGAGAGTGAAGTCTCGGAGACGAAAGAGG 1314
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1376 AGCTTGGAAACCTAATGGCCCAAATGGATGGTGAGAGTGAAGTCTCAGAGACGAAAGAGG 1435
Query 1315 TCCAGGACGCCACTGTCTTGCCCTTGTCGACCACCAATACCTCTTCTTCTGGGTCAGGGA 1374
|||||||||||||||||| | | |||||||||||||||||||||||| ||||||
Sbjct 1436 TCCAGGACGCCACTGTCT--C----G---ACCACCAATACCTCTTCTTCTGGGGCAGGGA 1486
Query 1375 ATGTTATACATGCAAATAAAAAGAAGAGTAACAGAAGAAAGAGTTAGATCAAGATTCAAA 1434
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1487 ATGTTATACATGCAAATAAAAAGAAGAGTAACAGAAGAAAGGGTTAGATCAAGATTCAAA 1546
Query 1435 CTC 1437
|||
Sbjct 1547 CTC 1549
> AT2G27160.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; Has 2 Blast hits to 2
proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink). | chr2:11607432-11608416 REVERSE LENGTH=818
Length=818
Score = 113 bits (61), Expect = 4e-24
Identities = 79/88 (90%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 1347 ACCAATACCTCTTCTTCTGGGTCAGGGAATGTTATACATGCAAATAAAAAGAAGAGTAAC 1406
|||||||||||||| |||||||| | ||||| | || ||||||||||||||||||||||
Sbjct 728 ACCAATACCTCTTCCTCTGGGTCTGAGAATGCCACACGTGCAAATAAAAAGAAGAGTAAC 787
Query 1407 AGAAGAAAGAGTTAGATCAAGATTCAAA 1434
||||||||| ||||||||||| ||||||
Sbjct 788 AGAAGAAAGGGTTAGATCAAGTTTCAAA 815
Score = 108 bits (58), Expect = 2e-22
Identities = 74/82 (90%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 855 AGTCTGAGCAAGGATGGTTGTGGAAGCTGTGAATATTCTGACAGTGGAATGACTGATGCT 914
|||| ||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 572 AGTCCGAGCAAGGATGATTGTGGAAGCTGTGAATATTCTGACAGTAGAATGGCTGATGCT 631
Query 915 CTCCTGAACAGCAAAGTGGACA 936
||| | ||||| ||| ||||||
Sbjct 632 CTCGTTAACAGAAAATTGGACA 653
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71083971720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5