BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932813
Length=610
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26040.1 | Symbols: PYL2, RCAR14 | PYR1-like 2 | chr2:110948... 835 0.0
> AT2G26040.1 | Symbols: PYL2, RCAR14 | PYR1-like 2 | chr2:11094832-11095404
REVERSE LENGTH=573
Length=573
Score = 835 bits (452), Expect = 0.0
Identities = 532/571 (93%), Gaps = 3/571 (1%)
Strand=Plus/Plus
Query 21 ATGAGCTCCTCCCCGGTCGTGAAAGGCCTAACCGACGAAGAGCACAAAACCCTCGAACCG 80
|||||||| ||||||| |||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1 ATGAGCTCATCCCCGGCCGTGAAAGGCCTAACCGATGAAGAGCAGAAAACCCTCGAACCG 60
Query 81 GTTATCAAAACATACCACCGGTTCGAACCGGACCCATCCACTTGCACCTCTCTCATAACC 140
||||||||||| ||||||| ||||||||| |||||| |||| ||||| ||||||||||||
Sbjct 61 GTTATCAAAACGTACCACCAGTTCGAACCAGACCCAACCACGTGCACTTCTCTCATAACC 120
Query 141 CAACGCATCGACGCCCCCGCCTCC-TCCGTTTGGCCGCTCATCCGCCGTTTCGACAACCC 199
||||||||| |||| || |||||| | |||||||| || |||||||| |||||||||||
Sbjct 121 CAACGCATCCACGCTCCGGCCTCCGT-GGTTTGGCCTCTTATCCGCCGCTTCGACAACCC 179
Query 200 CGAACGGTACAAACACTTCGTCAAAAGCTGCCGTCTCATCTCCGGCGATGGTGGTATCGG 259
|||||| ||||||||||| || ||||| ||||||||||||||||| ||||||| ||||
Sbjct 180 CGAACGCTACAAACACTTTGTAAAAAGGTGCCGTCTCATCTCCGGTGATGGTGACGTCGG 239
Query 260 AAGCGTCCGAGAAGTGACCGTAATCTCCGGCCTCCCAGCCTCAACCAGCACCGAGCGGCT 319
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 240 AAGCGTCAGAGAAGTGACCGTAATCTCCGGCCTCCCAGCCTCAACCAGTACCGAGCGGCT 299
Query 320 TGAGTTCGTCGACGACGACCACCGTGTTCTAAGCTTCAGGGTCGTCGGCGGAGAACACCG 379
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 300 TGAGTTCGTCGATGACGACCACCGTGTTCTAAGCTTCAGGGTCGTCGGCGGAGAGCACCG 359
Query 380 GCTTAAGAACTACAAATCAGTGACGTCGGTCAACGAGTTCTTGAATCAAGATTCCGGCAA 439
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 360 ACTCAAGAACTACAAATCAGTGACGTCGGTCAATGAGTTCTTGAATCAAGATTCCGGCAA 419
Query 440 GGTCTACACGGTGGTTCTTGAATCTTACACCGTTGATATTCCCGAGGGAAACACAGAGGA 499
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GGTTTACACGGTGGTTCTTGAATCTTACACCGTTGATATTCCCGAGGGAAACACAGAGGA 479
Query 500 AGACACCAAAATGTTTGTGGACACTGTCGTCAAACTCAATCTTCAGAAACTCGGAGTTGC 559
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 480 AGACACTAAAATGTTTGTGGACACTGTCGTCAAACTCAACCTTCAGAAACTCGGAGTTGC 539
Query 560 CGCCACTTCTGCACCTATGCATGATGAATGA 590
|||||| |||||||||||||||||||| |||
Sbjct 540 CGCCACATCTGCACCTATGCATGATGA-TGA 569
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29386975995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5