BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932816
Length=1104
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26060.1 | Symbols: emb1345 | Transducin/WD40 repeat-like su... 1797 0.0
AT4G32990.1 | Symbols: | Transducin/WD40 repeat-like superfami... 627 9e-179
> AT2G26060.1 | Symbols: emb1345 | Transducin/WD40 repeat-like
superfamily protein | chr2:11102301-11105355 FORWARD LENGTH=1386
Length=1386
Score = 1797 bits (973), Expect = 0.0
Identities = 1051/1090 (96%), Gaps = 0/1090 (0%)
Strand=Plus/Plus
Query 15 TCATAGATGGATTTGATGGAGAAGAACTTGGAGTTAGTGGAGATTCAGAAACTTGAAGGC 74
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 94 TCATAGATGGATTTGATGGAGAAGAACTTGGAGTTAGTGGAGATTCAGAAACTAGAAGGC 153
Query 75 CACACCGATCGGGTTTGGAGCGTAGCTTGGAACCCTGTCTCTTCTCACGCCGACGGTGTT 134
||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 154 CACACCGATCGTGTTTGGAGCGTAGCTTGGAACCCCGTTTCTTCTCACGCCGACGGTGTT 213
Query 135 TCACCGATTCTTGCTTCTTGCAGTGGCGATAGCACCGTTCGAATCTGGGAACAAAGCTCT 194
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 214 TCACCGATTCTTGCTTCTTGCAGTGGCGATAACACTGTTCGAATCTGGGAACAAAGCTCT 273
Query 195 CTCTCTCGCTCCTGGACTTGCAAGACAGTTTTGGATGAAACGCATACAAGAACTGTGAGG 254
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 274 CTCTCTCGCTCCTGGACTTGCAAGACAGTTTTGGAAGAGACGCATACAAGAACTGTGAGG 333
Query 255 TCATGTGCTTGGTCACCCTCAGGACAGTTATTGGCCACTGCAAGTTTTGATGGTACCACT 314
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 334 TCGTGCGCTTGGTCACCCTCAGGACAGTTATTGGCCACTGCAAGTTTTGATGGTACCACT 393
Query 315 GGCATTTGGAAGAAATATGGTTCTGAGTTTGACTGTATTTCCACTTTAGAGGGACATGAA 374
|||||||||||||| || |||||||||||||| |||||||||||||| ||||||||||||
Sbjct 394 GGCATTTGGAAGAATTACGGTTCTGAGTTTGAGTGTATTTCCACTTTGGAGGGACATGAA 453
Query 375 AACGAAGTCAAAAGTGTATCATGGAATGCATCTGGTTCACACCTTGCAACATGTAGTAGA 434
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 454 AACGAAGTCAAAAGTGTATCATGGAATGCATCTGGTTCATGCCTTGCAACATGTAGTAGA 513
Query 435 GATAAGTCTGTTTGGATTTGGGAAGTGCTTGAAGGGAATGAGTATGATTGTGCTGCGGTG 494
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 514 GATAAGTCTGTTTGGATTTGGGAAGTGCTTGAAGGGAATGAATATGACTGTGCTGCGGTA 573
Query 495 TTAACTGGGCATACACAAGATGTGAAGATGGTTCAATGGCATCCTACCATGGATGTTTTA 554
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 574 TTAACTGGGCATACACAAGATGTGAAGATGGTTCAGTGGCATCCCACCATGGATGTTTTA 633
Query 555 TTTTCTTGCAGTTATGATAACACCATAAAGGTTTGGTGGTCTGAAGATGATGATGGTGAG 614
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 634 TTTTCTTGCAGTTATGATAACACCATCAAGGTTTGGTGGTCTGAAGATGATGATGGTGAG 693
Query 615 TATCAATGTGTCCAAACCTTAGGTGAATCTAACAACGGTCACTCTTCTACGGTGTGGTCC 674
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 694 TATCAATGTGTCCAAACCTTAGGTGAATCTAACAACGGTCACTCTTCAACGGTATGGTCC 753
Query 675 ATCTCATTTAACGCTGCAGGGGACAAGATGGTCACTTGTAGTGATGATCTAACATTGAAG 734
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 754 ATCTCATTTAACGCTGCAGGGGACAAGATGGTCACTTGTAGTGATGATCTAACCTTGAAG 813
Query 735 ATATGGGGGACGGATATTGCCAGGATGCAGTCTGGTGAAGATTATGCACCTTGGATTCAT 794
||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 814 ATATGGGGGACAGATATTGCCAAGATGCAGTCTGGTGAAGAATATGCACCTTGGATTCAT 873
Query 795 CTTTGTACTCTCTCTGGTTATCATGACCGTACCATATACTCTGCTCACTGGTCAAGGGAT 854
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 874 CTTTGTACTCTCTCTGGCTATCATGACCGTACCATATACTCAGCTCACTGGTCAAGGGAC 933
Query 855 GACATTATTGTCAGTGGAGCAGGCGATAATGCTATACGGTTGTTTGTGGAGAGCAAACAT 914
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 934 GACATTATTGCCAGTGGAGCAGGCGATAATGCTATACGGTTGTTTGTGGACAGCAAACAT 993
Query 915 GACTCTGTTGATGGACCTTCATATAATCTTTTGCTGAAGAAGAATAAAGCACATGAAAAT 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 994 GACTCTGTTGATGGACCTTCATATAATCTTTTGCTGAAGAAGAATAAAGCACATGAAAAT 1053
Query 975 GATGTAAATTCTGTCCAATGGTCACCCGGTGAGGGGAACCGGTTACTTGCCTCGGCTAGT 1034
|||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1054 GATGTAAACTCTGTCCAATGGTCACCCGGTGAGGGGAACCGGTTGCTTGCGTCGGCTAGT 1113
Query 1035 GACGATGGGATGGTCAAGATTTGGCAGCTTGCAACTAAACAGTGACTGGTGTTGGTTTGG 1094
|| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 1114 GATGATGGGATGGTCAAGATTTGGCAGCTTGCAACTAAACCGTGACTGCTGTTGGTTTGG 1173
Query 1095 ATAGGTTCTG 1104
||||||||||
Sbjct 1174 ATAGGTTCTG 1183
> AT4G32990.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr4:15920230-15922658 FORWARD LENGTH=987
Length=987
Score = 627 bits (339), Expect = 9e-179
Identities = 594/716 (83%), Gaps = 22/716 (3%)
Strand=Plus/Plus
Query 365 GGGACATGAAAACGAAGTCAAAAGTGTATCATGGAATGCATCTGGTTCACACCTTGCAAC 424
||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 267 GGGACATGAAAGCGAAGTCAAAAGTGTATCATGGAATGCATCTGGTTCGTTGCTTGCAAC 326
Query 425 ATGTAGTAGAGATAAGTCTGTTTGGATTTGGGAAGT---GCTTGAAG-GGA--ATGAGTA 478
||| ||||||| |||||||| |||||||||||| | | || | ||| |||| |
Sbjct 327 TTGTGGTAGAGACAAGTCTGTCTGGATTTGGGAAATACAACCAGAGGAGGACGATGAATT 386
Query 479 TGATTGTGCTGCGGTGTTAACTGGGCATACACAAGATGTGAAGATGGTTC-AATGGCATC 537
|||| | ||| ||||||||||| ||| || ||||||| ||||||| || |||||||
Sbjct 387 TGATACTATTGCAGTGTTAACTGGTCATTCAGAAGATGTTAAGATGG-TCTTGTGGCATC 445
Query 538 CTACCATGGATGTTTTATTTTCTTGCAGTTATGATAACACCATAAAGGTTTGGTGGTCTG 597
| |||||||||||||| || |||||||||||||||||||| || ||| ||||||| ||||
Sbjct 446 CCACCATGGATGTTTTGTTCTCTTGCAGTTATGATAACACTATCAAGATTTGGTGCTCTG 505
Query 598 AAGATGATGATGGTGAGTATCAA-TGTGTCCAAACCTTAGGTGAATC-TAACAACGGTCA 655
| ||||| |||||||| ||| || ||||| ||||||||| ||||| | |||||| |||||
Sbjct 506 AGGATGAAGATGGTGATTAT-AATTGTGTACAAACCTTAAGTGAA-CTTAACAATGGTCA 563
Query 656 CTCTTCTACGGTGTGGTCCATCTCATTTAACGCTGCAGGGGACAAGATGGTCACTTGTAG 715
|||||||| || ||| ||||| ||||| |||||||||||||||||||||||||||||
Sbjct 564 TTCTTCTACCGTCTGGAGTATCTCTTTTAATGCTGCAGGGGACAAGATGGTCACTTGTAG 623
Query 716 TGATGATCTAACATTGAAGATATGGGGGACGGATATTGCCAGGATGCAGTCTGGTGAAG- 774
|||||||||| || |||| |||||| ||| |||||| | |||||||| ||||||||||
Sbjct 624 TGATGATCTAGCAGTGAAAATATGGAAGACAGATATTTCAAGGATGCAATCTGGTGAAGG 683
Query 775 ATTATGCACCTTGGATTCATCTTTGTACTCTCTCTGGTTATCATGACCGTACCATATACT 834
|| ||| ||| |||| |||| ||||||| |||||||||| ||| || ||||||||||| |
Sbjct 684 AT-ATGTACCCTGGACTCATGTTTGTACACTCTCTGGTTTTCACGATCGTACCATATATT 742
Query 835 CTGCTCACTGGTCAAGGGATGACATTATTG-TCAGTGGAGCAGGCGATAATGCTATACGG 893
| | ||| ||||||||||| | |||||| | ||||||||||||||| || |||||| |
Sbjct 743 CAGTTCATTGGTCAAGGGACGGTGTTATTGCT-AGTGGAGCAGGCGATGATACTATACAG 801
Query 894 TTGTTTGTGGAGAGCAAACA-TGACTCTGTTGATGGACCTTCATATAATCTTTTGCTGAA 952
|| |||||||| ||| | || |||||||||||||||||||||||| || |||||| | ||
Sbjct 802 TTATTTGTGGACAGCGA-CAGTGACTCTGTTGATGGACCTTCATACAAACTTTTGGTTAA 860
Query 953 GAAGAATAAAGCACATGAAAATG-ATGTAAATTCTGTCCAATGGTCACCCGGTGAGGGGA 1011
|||| | ||||||||||||| || |||||||||| ||||||||| |||| | | ||| |
Sbjct 861 GAAGGAGAAAGCACATGAAA-TGGATGTAAATTCGGTCCAATGGGCACCTGATAAGGA-A 918
Query 1012 A-CCGGTTACTTGCCTCGGCTAGTGACGATGGGATGGTCAAGATTTGGCAGCTTGC 1066
| |||||| ||||||||||| || |||||| ||||| ||||||||| | |||||
Sbjct 919 AGCCGGTTGCTTGCCTCGGCCAGCGACGATAAAATGGTTAAGATTTGGAAACTTGC 974
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54116187510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5