BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932821
Length=1144
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26100.1 | Symbols: | Galactosyltransferase family protein ... 1792 0.0
> AT2G26100.1 | Symbols: | Galactosyltransferase family protein
| chr2:11115905-11118208 REVERSE LENGTH=1502
Length=1502
Score = 1792 bits (970), Expect = 0.0
Identities = 1099/1159 (95%), Gaps = 18/1159 (2%)
Strand=Plus/Plus
Query 1 CCAACCACAGATTTACGATAATGCCACTCTTCTCCCACCGCTTCACCACCGCATCTTCTT 60
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 60 CCAACCTCAGATTTACGATAATGCCACTATTCTCCCACCGCTTCACCACCGCATCTTCTT 119
Query 61 CTTCTCCGGCGTCTCCTTCGTACTACAATAAACCCTCTTCGAAAACCCACAAACCAAA-- 118
|||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 120 CTTCCCCGGCGTCTCCTTCTTACTACAATAAACCCTCTTCGAAAACCCATAAACCAAACT 179
Query 119 ---C-TCTTCTTCTTATGCTTCGTCTCGTATTCATGTAGCTATCATATTCTTCTCCCTTG 174
| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CTTCTTCTTCTTCTTATACTTCGTCTCGTATTCATGTAGCTATCATATTCTTCTCCCTTG 239
Query 175 TCTCTGTTTTCATCGGAGTCGCCGGAACTATCTTCGCACTCTCCTCCACCGGTCCTGCGT 234
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 240 TCTCTGTTTTCATCGGAGTCGCCGGAACTATCTTCGCACTCTCCTCCACCGGTCCTGCTT 299
Query 235 CTGTTTATAGATGCGGTGGATCTAAAGACACTTCTCGGGTTGTTTCTACTTCAAGAAAGC 294
|||||||| ||||||| |||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 300 CTGTTTATCGATGCGGCGGATCTAAAGACACTTCTCGGGTTGTGTCTGCTTCAAGAAAGC 359
Query 295 TTGGAGGAGATGGTGGTAAT---GGTGTTGTTG---AAAGACGAAAGCTTTTAGGGTTTG 348
| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 360 TCGGAGGAGATGGTGGTAATAATGGTGTTGTTGTTGAAAGACGAAAGCTTTTAGGGTTTG 419
Query 349 TTGGGATCCAGACTGGTTTTGATTCCGGTGATCGTAGAACTGCTTTGAGAAGCACTTGGT 408
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 420 TTGGGATCCAGACTGGTTTTGATTCCGGTGATCGTAGAACTGCTTTGAGAAGTACTTGGT 479
Query 409 TCCCTTCTGATCCCGATTCTCTTTTAAGGTTGGAACAAGCGACTGGATTAGCTTTTAGAT 468
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 480 TCCCTTCTGATCCTGATTCTCTTCTAAGGTTGGAACAAGCGACTGGATTAGCTTTTAGAT 539
Query 469 TCGTCATCGGACGGTCAAAGGATGC-AAAGAAGATGGCTGAGCTTGAGAAGGAGATAAAA 527
||||||| ||| |||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 540 TCGTCATTGGAAAGTCAAAGGATGCCAAA-AAGATGGCTGAGCTTGAGAAGGAGATAAAA 598
Query 528 GAGTATAGAGATTTTGTGCTTCTTGATGTCGAGGAAGAATATGTACGACTTCCATATAAA 587
||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 599 GAGTACAGAGATTTTGTGCTTCTTGATACCGAGGAAGAATATATACGACTTCCATATAAA 658
Query 588 ACGTTGGCATTT-TTCAAAGCAGCTTTTAAACTCTTTGAAGCTGATTATTATGTCAAAGC 646
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 ACGTTGGC-TTTCTTCAAAGCAGCTTTTAAACTCTTTGAAGCTGATTATTATGTCAAAGC 717
Query 647 CGACGACGACATTTATCTGAGACCAGATCGACTTGCGACGCTTCTTGCCAAGGAAAGACT 706
|||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 718 CGACGATGACATTTATTTGAGACCAGATCGACTTGCGACGCTTCTTGCCAATGAAAGACT 777
Query 707 TCATTCACAGACATACATTGGTTGCATGAAGAAAGGACCAGTTATAACTGACCCTAAACT 766
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 778 TCATTCACAGACATACATTGGCTGCATGAAGAAAGGACCAGTTATAACTGACCCTAAACT 837
Query 767 AAAATGGTACGAGAAACAAGGCAATTTGATTGGAAATGAATA-TTTCCTACATGCTTATG 825
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 838 AAAATGGTACGAGAAACAAGGCAATTTGATTGGAAATGAATACTTTT-TACATGCTTATG 896
Query 826 GACCGATATACGTTCTTTCAGCCGAGATAGTGGCTTCAATTGCAGCAGCTCGGAATGGCA 885
||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||
Sbjct 897 GACCGATATACGTTCTTTCAGCCGAGATAGTAGCTTCACTTGCAGCAGCTAGGAATGGCA 956
Query 886 GCCTGAGGATGTTTAATAATGAAGATGTAACTATCGGATCTTGGATGCTTGCAATGGATG 945
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 GTCTGAGAATGTTTAATAATGAAGATGTAACTATCGGATCTTGGATGCTTGCAATGGATG 1016
Query 946 TACATCACGAGGACAACCGTGCTTTATGCGATCCTCATTGTTCCCCAAAGTCCATAGCAG 1005
|||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1017 TACATCACGAAGACAACCGCGCTTTATGCGATCCGCATTGTTCCCCAAAGTCCATAGCAG 1076
Query 1006 TCTGGGACATTCCGAAATGCTCAGGGCTTTGTAACCCGGAGAGTCGGTTAAAGGAGCTTC 1065
| ||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 1077 TTTGGGACATTCCCAAATGCTCAGGGCTTTGTGACCCGGAGAGTCGGTTAAAAGAGCTTC 1136
Query 1066 ATAAGACAGATATGTGCTCCAAGAGTCCGACATTGCCTCCCGATGACATCGATCAGTAGT 1125
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1137 ATAAGACGGATATGTGCTCCAAGAGTCCGACATTACCTCCCGATGACATCGATCAGTAGT 1196
Query 1126 TTGTTTCACGAGTTGCCCC 1144
|||||||| ||||||||||
Sbjct 1197 TTGTTTCAAGAGTTGCCCC 1215
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56124209310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5