BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg932837 Length=1042 Score E Sequences producing significant alignments: (Bits) Value AT2G24748.1 | Symbols: | pseudogene of transcriptional factor ... 710 0.0 AT2G24645.1 | Symbols: | Transcriptional factor B3 family prot... 294 1e-78 AT4G00260.1 | Symbols: MEE45 | Transcriptional factor B3 family... 71.3 2e-11 > AT2G24748.1 | Symbols: | pseudogene of transcriptional factor B3 family protein | chr2:10536845-10537829 FORWARD LENGTH=772 Length=772 Score = 710 bits (384), Expect = 0.0 Identities = 521/585 (89%), Gaps = 17/585 (3%) Strand=Plus/Plus Query 74 GACGGCAGAGTTAAGATCAGACGCATCCAAGAAAACCTGGAAAGTGAAAATAGATGGCCA 133 ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 54 GACGGCAGAGTTAAGGTCAGATGCATCCAAGAAAACCTGGAAAGTGAAAATAGATGGCCA 113 Query 134 GAGACTCACCAACGGTTGGACAGAGTTTGCTCTCGCACATGATCTTCGAATCGGCGACAT 193 |||||| ||||||||||||| |||||||||||||||||||||| ||||| | |||||||| Sbjct 114 GAGACTTACCAACGGTTGGAAAGAGTTTGCTCTCGCACATGATGTTCGACTAGGCGACAT 173 Query 194 CATTGTTTTCAGACAAGAGAGATC-CATGACTTTCCACGTTACAATGTTGGGACCTAGTT 252 ||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||| Sbjct 174 CATTGTTTTCAGACAAGAGAG-TGGCATGACTTTCCACGTTACAATGTTAGGACCTAGTT 232 Query 253 GTTATGAGATTCAATATGTGTCTTGTCTAGACAACCAGAACAACCTCGGGAAGATTCAAA 312 ||| ||| ||||||||||||| | | ||||||||||||||||||||||||||||||||| Sbjct 233 GTTGTGA--TTCAATATGTGTCGTCTTTAGACAACCAGAACAACCTCGGGAAGATTCAAA 290 Query 313 GGAAGAAGAAAGAAGCAGAGTCTTCACTAGATCTCTCTTGTTTCATTGCTAATGTCACGC 372 |||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct 291 GGAAAAAGAAAGAAGCAGAGTCTTCACTAGATCTCTCTTGTTTTGTGGCTAATGTCACGC 350 Query 373 CTTCGAATCTACG-T-T---AT-GACTCACTG-GA--CAAATGGTCTAGACAAAAGATGT 423 |||||||||||| | | || || | || || ||||||||||||||||||| ||| Sbjct 351 CTTCGAATCTACAATCTTCCATTGAGTTT-TGTGAGGCAAATGGTCTAGACAAAAGGTGT 409 Query 424 GGCGATATGATTCTGATCAACGAAAG-GGTAGATCATGGACTGTAG-CTTTGAAACGAAA 481 || || ||||||||||||||||||| || |||||||||||||||| ||| ||||||||| Sbjct 410 GGAGAGATGATTCTGATCAACGAAAAAGGCAGATCATGGACTGTAGACTT-GAAACGAAA 468 Query 482 GAAATCATGTGGAACTACTTACATCAGACGAGGATGGAGAAGTTTCTGTCATGCTAATGG 541 ||| |||||| |||||||||||||| |||||||||| ||||||||||| |||| ||||| Sbjct 469 GAACTCATGTCCAACTACTTACATCAAACGAGGATGGGGAAGTTTCTGTAATGCCAATGG 528 Query 542 ACTTAGAGCTGGAAGTTTCTTCACTTTCAAACTGATCGAAAGGGGAGGAACTCTGGGTTT 601 | ||||||||||||||||||| | |||||||||| || |||| || ||||||| ||||| Sbjct 529 ATTTAGAGCTGGAAGTTTCTTTAGTTTCAAACTGTTCCAAAGAGGTGGAACTCCAGGTTT 588 Query 602 ACGTTTATCCCACAGAGAGCTAGATGAAGAAGCTAATGCAATAGA 646 ||||| ||||||||||||| |||| |||||||||| | ||||||| Sbjct 589 ACGTTCATCCCACAGAGAGGTAGAAGAAGAAGCTATTACAATAGA 633 > AT2G24645.1 | Symbols: | Transcriptional factor B3 family protein | chr2:10480532-10482795 REVERSE LENGTH=1814 Length=1814 Score = 294 bits (159), Expect = 1e-78 Identities = 443/572 (77%), Gaps = 52/572 (9%) Strand=Plus/Plus Query 74 GACGGCAGAGTTAAGATCAGACGCATCCAAGAAAACCTGGAAAGTGAAAATAGATGGCCA 133 |||||| ||| | |||||||| || || |||| ||| ||| ||||||| |||||||| || Sbjct 253 GACGGCGGAGCTGAGATCAGATGCGTCAAAGATAACTTGGGAAGTGAAGATAGATGGACA 312 Query 134 GAGACTCACCAACGGTTGGACAGAGTTTGCTCTCGCACATGATCTTCGAATCGGCGACAT 193 ||||||||| ||||||||| ||||||||||||| ||||||||||||||||||| ||||| Sbjct 313 GAGACTCACTGACGGTTGGAAAGAGTTTGCTCTCTCACATGATCTTCGAATCGGTGACAT 372 Query 194 CATTGTTTTCAGACAAGAGAGATCCATGACTTTCCACGTTACAATGTTGGGACCTAGTTG 253 |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 373 TGTTGTTTTCAGACAAGAGAGAGATATGTCTTTCCACGTTACAATGTTGGGACCTAGTTG 432 Query 254 TTATGAGATTCAATATGTGT-CTTGT-CTAGACAACCAGA-ACAACCTCGGGAAGATTCA 310 || |||||| ||||||| || | ||| | |||| | ||| | ||||||| ||||| | Sbjct 433 TTGTGAGATCCAATATG-GTTCGTGTTC-AGACGAGGAGAGA-AACCTCGAGAAGAAGAA 489 Query 311 -AAGGAAGAA-GAAAGAAGCAGAGTCTTC---ACTAGATCTCT-CTTGTTTCATT-G-CT 362 || | || | | |||||| ||||||| |||||||| || ||||||| || | || Sbjct 490 GAATCCA-AATGGA-GAAGCAAAGTCTTCTTCACTAGATC-CTTCTTGTTT--TTCGGCT 544 Query 363 AATGTCACGCCTTCGAATCTACGTTATGACTCACTGGA----CAAATGG-TCTAG--AC- 414 ||||| ||||||||| |||||||||||||| | || | ||||| | | | | Sbjct 545 AATGTGGCGCCTTCGAGTCTACGTTATGACTTAATGCTTTTTCCAATGGGTTTTGTGAGG 604 Query 415 -AAAA-GATGTGG-CG-ATATG-A----TT---CTGATCAACGAAA-GGGTAGATCATGG 461 |||| | ||| | || || || | || ||||| || |||| ||| ||||||||| Sbjct 605 GAAAATGGTGTAGTCGGATCTGGAAAGATTGTTCTGATGAATGAAAAGGGCAGATCATGG 664 Query 462 ACTGT-AGCTTTGAAACGAAAGAAATCATGTGGAACTACTT-ACATCAGACGAGGATGGA 519 | | | | ||| || || |||| |||||| ||||| | || | | ||| |||| ||| Sbjct 665 AATTTTAACTT-GAGACAAAAGCCATCATGCGGAAC-AGTTTATGTTAGAGGAGGGTGGG 722 Query 520 -GAAGTTTCTGTCATGCTAATGGACTT-AGAGCTGGAAGTT-TCTTCACTTTCAAACTGA 576 || |||| ||| |||| ||||||||| | ||||||| | | ||| |||||||||||||| Sbjct 723 TGA-GTTTTTGTGATGCCAATGGACTTCA-AGCTGGA-GATATCTACACTTTCAAACTGA 779 Query 577 TCGAAAGGGGAGGAACTCTGGGTT-TACGTTT 607 || |||| ||||||||||| | || ||||||| Sbjct 780 TCAAAAGAGGAGGAACTCTTG-TTCTACGTTT 810 Score = 195 bits (105), Expect = 1e-48 Identities = 159/184 (86%), Gaps = 8/184 (4%) Strand=Plus/Plus Query 398 GGACAAATGGTCTAGACAAAAGATGTGGCGATATGATTCTGATCAACG-AAAGGGTAGAT 456 ||| ||||||| ||||||||||| |||| || ||||||||||| || | |||||| | || Sbjct 922 GGA-AAATGGTGTAGACAAAAGACGTGGAGAGATGATTCTGATGAATGAAAAGGGCAAAT 980 Query 457 CATGGACTGTAGCTTTGAAACGAAAGAAATCATGTGGAAC-TACTTACATCAGACGAGGA 515 |||||||| ||| |||||||| |||||||||||| ||||| | | | ||||||||||||| Sbjct 981 CATGGACTTTAGATTTGAAACTAAAGAAATCATGCGGAACTTCCCT-CATCAGACGAGGA 1039 Query 516 TGGAGAAGTTTCTGTCA-TGCTAATGGACTTAGAGCTGGAAGTTTC-TTCACTTTCAAAC 573 ||||||||||||||| | ||| |||||||| |||||||||||| || || |||||||||| Sbjct 1040 TGGAGAAGTTTCTGT-AGTGCCAATGGACTAAGAGCTGGAAGTATCATT-ACTTTCAAAC 1097 Query 574 TGAT 577 |||| Sbjct 1098 TGAT 1101 Score = 87.9 bits (47), Expect = 2e-16 Identities = 57/62 (92%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 14 TTTGAGAATGGCGAATCAACATTTCTTCAAGCCTCTTCTTCCTGGCTTTCAAAGCTACTT 73 ||||| |||||||||||||||||||||||||||||||||||||||||| || | | |||| Sbjct 139 TTTGAAAATGGCGAATCAACATTTCTTCAAGCCTCTTCTTCCTGGCTTCCACACCCACTT 198 Query 74 GA 75 || Sbjct 199 GA 200 > AT4G00260.1 | Symbols: MEE45 | Transcriptional factor B3 family protein | chr4:114971-117051 FORWARD LENGTH=1587 Length=1587 Score = 71.3 bits (38), Expect = 2e-11 Identities = 40/41 (98%), Gaps = 0/41 (0%) Strand=Plus/Plus Query 21 ATGGCGAATCAACATTTCTTCAAGCCTCTTCTTCCTGGCTT 61 |||||| |||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCGCATCAACATTTCTTCAAGCCTCTTCTTCCTGGCTT 41 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51088127499 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5