BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932837
Length=1042
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24748.1 | Symbols: | pseudogene of transcriptional factor ... 710 0.0
AT2G24645.1 | Symbols: | Transcriptional factor B3 family prot... 294 1e-78
AT4G00260.1 | Symbols: MEE45 | Transcriptional factor B3 family... 71.3 2e-11
> AT2G24748.1 | Symbols: | pseudogene of transcriptional factor
B3 family protein | chr2:10536845-10537829 FORWARD LENGTH=772
Length=772
Score = 710 bits (384), Expect = 0.0
Identities = 521/585 (89%), Gaps = 17/585 (3%)
Strand=Plus/Plus
Query 74 GACGGCAGAGTTAAGATCAGACGCATCCAAGAAAACCTGGAAAGTGAAAATAGATGGCCA 133
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 54 GACGGCAGAGTTAAGGTCAGATGCATCCAAGAAAACCTGGAAAGTGAAAATAGATGGCCA 113
Query 134 GAGACTCACCAACGGTTGGACAGAGTTTGCTCTCGCACATGATCTTCGAATCGGCGACAT 193
|||||| ||||||||||||| |||||||||||||||||||||| ||||| | ||||||||
Sbjct 114 GAGACTTACCAACGGTTGGAAAGAGTTTGCTCTCGCACATGATGTTCGACTAGGCGACAT 173
Query 194 CATTGTTTTCAGACAAGAGAGATC-CATGACTTTCCACGTTACAATGTTGGGACCTAGTT 252
||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||
Sbjct 174 CATTGTTTTCAGACAAGAGAG-TGGCATGACTTTCCACGTTACAATGTTAGGACCTAGTT 232
Query 253 GTTATGAGATTCAATATGTGTCTTGTCTAGACAACCAGAACAACCTCGGGAAGATTCAAA 312
||| ||| ||||||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct 233 GTTGTGA--TTCAATATGTGTCGTCTTTAGACAACCAGAACAACCTCGGGAAGATTCAAA 290
Query 313 GGAAGAAGAAAGAAGCAGAGTCTTCACTAGATCTCTCTTGTTTCATTGCTAATGTCACGC 372
|||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 291 GGAAAAAGAAAGAAGCAGAGTCTTCACTAGATCTCTCTTGTTTTGTGGCTAATGTCACGC 350
Query 373 CTTCGAATCTACG-T-T---AT-GACTCACTG-GA--CAAATGGTCTAGACAAAAGATGT 423
|||||||||||| | | || || | || || ||||||||||||||||||| |||
Sbjct 351 CTTCGAATCTACAATCTTCCATTGAGTTT-TGTGAGGCAAATGGTCTAGACAAAAGGTGT 409
Query 424 GGCGATATGATTCTGATCAACGAAAG-GGTAGATCATGGACTGTAG-CTTTGAAACGAAA 481
|| || ||||||||||||||||||| || |||||||||||||||| ||| |||||||||
Sbjct 410 GGAGAGATGATTCTGATCAACGAAAAAGGCAGATCATGGACTGTAGACTT-GAAACGAAA 468
Query 482 GAAATCATGTGGAACTACTTACATCAGACGAGGATGGAGAAGTTTCTGTCATGCTAATGG 541
||| |||||| |||||||||||||| |||||||||| ||||||||||| |||| |||||
Sbjct 469 GAACTCATGTCCAACTACTTACATCAAACGAGGATGGGGAAGTTTCTGTAATGCCAATGG 528
Query 542 ACTTAGAGCTGGAAGTTTCTTCACTTTCAAACTGATCGAAAGGGGAGGAACTCTGGGTTT 601
| ||||||||||||||||||| | |||||||||| || |||| || ||||||| |||||
Sbjct 529 ATTTAGAGCTGGAAGTTTCTTTAGTTTCAAACTGTTCCAAAGAGGTGGAACTCCAGGTTT 588
Query 602 ACGTTTATCCCACAGAGAGCTAGATGAAGAAGCTAATGCAATAGA 646
||||| ||||||||||||| |||| |||||||||| | |||||||
Sbjct 589 ACGTTCATCCCACAGAGAGGTAGAAGAAGAAGCTATTACAATAGA 633
> AT2G24645.1 | Symbols: | Transcriptional factor B3 family protein
| chr2:10480532-10482795 REVERSE LENGTH=1814
Length=1814
Score = 294 bits (159), Expect = 1e-78
Identities = 443/572 (77%), Gaps = 52/572 (9%)
Strand=Plus/Plus
Query 74 GACGGCAGAGTTAAGATCAGACGCATCCAAGAAAACCTGGAAAGTGAAAATAGATGGCCA 133
|||||| ||| | |||||||| || || |||| ||| ||| ||||||| |||||||| ||
Sbjct 253 GACGGCGGAGCTGAGATCAGATGCGTCAAAGATAACTTGGGAAGTGAAGATAGATGGACA 312
Query 134 GAGACTCACCAACGGTTGGACAGAGTTTGCTCTCGCACATGATCTTCGAATCGGCGACAT 193
||||||||| ||||||||| ||||||||||||| ||||||||||||||||||| |||||
Sbjct 313 GAGACTCACTGACGGTTGGAAAGAGTTTGCTCTCTCACATGATCTTCGAATCGGTGACAT 372
Query 194 CATTGTTTTCAGACAAGAGAGATCCATGACTTTCCACGTTACAATGTTGGGACCTAGTTG 253
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 373 TGTTGTTTTCAGACAAGAGAGAGATATGTCTTTCCACGTTACAATGTTGGGACCTAGTTG 432
Query 254 TTATGAGATTCAATATGTGT-CTTGT-CTAGACAACCAGA-ACAACCTCGGGAAGATTCA 310
|| |||||| ||||||| || | ||| | |||| | ||| | ||||||| ||||| |
Sbjct 433 TTGTGAGATCCAATATG-GTTCGTGTTC-AGACGAGGAGAGA-AACCTCGAGAAGAAGAA 489
Query 311 -AAGGAAGAA-GAAAGAAGCAGAGTCTTC---ACTAGATCTCT-CTTGTTTCATT-G-CT 362
|| | || | | |||||| ||||||| |||||||| || ||||||| || | ||
Sbjct 490 GAATCCA-AATGGA-GAAGCAAAGTCTTCTTCACTAGATC-CTTCTTGTTT--TTCGGCT 544
Query 363 AATGTCACGCCTTCGAATCTACGTTATGACTCACTGGA----CAAATGG-TCTAG--AC- 414
||||| ||||||||| |||||||||||||| | || | ||||| | | | |
Sbjct 545 AATGTGGCGCCTTCGAGTCTACGTTATGACTTAATGCTTTTTCCAATGGGTTTTGTGAGG 604
Query 415 -AAAA-GATGTGG-CG-ATATG-A----TT---CTGATCAACGAAA-GGGTAGATCATGG 461
|||| | ||| | || || || | || ||||| || |||| ||| |||||||||
Sbjct 605 GAAAATGGTGTAGTCGGATCTGGAAAGATTGTTCTGATGAATGAAAAGGGCAGATCATGG 664
Query 462 ACTGT-AGCTTTGAAACGAAAGAAATCATGTGGAACTACTT-ACATCAGACGAGGATGGA 519
| | | | ||| || || |||| |||||| ||||| | || | | ||| |||| |||
Sbjct 665 AATTTTAACTT-GAGACAAAAGCCATCATGCGGAAC-AGTTTATGTTAGAGGAGGGTGGG 722
Query 520 -GAAGTTTCTGTCATGCTAATGGACTT-AGAGCTGGAAGTT-TCTTCACTTTCAAACTGA 576
|| |||| ||| |||| ||||||||| | ||||||| | | ||| ||||||||||||||
Sbjct 723 TGA-GTTTTTGTGATGCCAATGGACTTCA-AGCTGGA-GATATCTACACTTTCAAACTGA 779
Query 577 TCGAAAGGGGAGGAACTCTGGGTT-TACGTTT 607
|| |||| ||||||||||| | || |||||||
Sbjct 780 TCAAAAGAGGAGGAACTCTTG-TTCTACGTTT 810
Score = 195 bits (105), Expect = 1e-48
Identities = 159/184 (86%), Gaps = 8/184 (4%)
Strand=Plus/Plus
Query 398 GGACAAATGGTCTAGACAAAAGATGTGGCGATATGATTCTGATCAACG-AAAGGGTAGAT 456
||| ||||||| ||||||||||| |||| || ||||||||||| || | |||||| | ||
Sbjct 922 GGA-AAATGGTGTAGACAAAAGACGTGGAGAGATGATTCTGATGAATGAAAAGGGCAAAT 980
Query 457 CATGGACTGTAGCTTTGAAACGAAAGAAATCATGTGGAAC-TACTTACATCAGACGAGGA 515
|||||||| ||| |||||||| |||||||||||| ||||| | | | |||||||||||||
Sbjct 981 CATGGACTTTAGATTTGAAACTAAAGAAATCATGCGGAACTTCCCT-CATCAGACGAGGA 1039
Query 516 TGGAGAAGTTTCTGTCA-TGCTAATGGACTTAGAGCTGGAAGTTTC-TTCACTTTCAAAC 573
||||||||||||||| | ||| |||||||| |||||||||||| || || ||||||||||
Sbjct 1040 TGGAGAAGTTTCTGT-AGTGCCAATGGACTAAGAGCTGGAAGTATCATT-ACTTTCAAAC 1097
Query 574 TGAT 577
||||
Sbjct 1098 TGAT 1101
Score = 87.9 bits (47), Expect = 2e-16
Identities = 57/62 (92%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 14 TTTGAGAATGGCGAATCAACATTTCTTCAAGCCTCTTCTTCCTGGCTTTCAAAGCTACTT 73
||||| |||||||||||||||||||||||||||||||||||||||||| || | | ||||
Sbjct 139 TTTGAAAATGGCGAATCAACATTTCTTCAAGCCTCTTCTTCCTGGCTTCCACACCCACTT 198
Query 74 GA 75
||
Sbjct 199 GA 200
> AT4G00260.1 | Symbols: MEE45 | Transcriptional factor B3 family
protein | chr4:114971-117051 FORWARD LENGTH=1587
Length=1587
Score = 71.3 bits (38), Expect = 2e-11
Identities = 40/41 (98%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 21 ATGGCGAATCAACATTTCTTCAAGCCTCTTCTTCCTGGCTT 61
|||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGCATCAACATTTCTTCAAGCCTCTTCTTCCTGGCTT 41
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51088127499
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5