BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932838
Length=222
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70140.1 | Symbols: ATFH8, FH8 | formin 8 | chr1:26412688-26... 219 1e-56
> AT1G70140.1 | Symbols: ATFH8, FH8 | formin 8 | chr1:26412688-26415230
REVERSE LENGTH=2465
Length=2465
Score = 219 bits (118), Expect = 1e-56
Identities = 183/213 (86%), Gaps = 10/213 (5%)
Strand=Plus/Plus
Query 8 TGGAGCTTGTGAAATGTACAACAGATTATTATTATCAAGCAGAAGCTGTTACAAA--GG- 64
|||||||||||||| ||||||| | ||||||||||||||| |||||||||||| ||
Sbjct 2194 TGGAGCTTGTGAAACGTACAAC-G--GATTATTATCAAGCAGGAGCTGTTACAAAGGGGA 2250
Query 65 -GAATCCTCTTCATCTATTTGTTATTGTTAGAGATTTTCTTGCCATGGTTGATAAAGTAT 123
|||||| |||||| | |||||||| |||||||||||||||||||||||||||||||| |
Sbjct 2251 AGAATCCACTTCATTTGTTTGTTATCGTTAGAGATTTTCTTGCCATGGTTGATAAAGTTT 2310
Query 124 GCTTAGAGATTATGAAGAA-TATGCAGAGGAGAAAGATTGGGAGTAGG-TATCGCATGCT 181
||||||| ||||||| ||| |||||||||||| ||| |||| ||| | |||||| | ||
Sbjct 2311 GCTTAGATATTATGA-GAAATATGCAGAGGAGGAAGGTTGGTAGTCCGATATCGCCTTCT 2369
Query 182 TCGCGGCGGAGTGCCGTGAAATTGCCGGTTTTG 214
|||| ||||| ||| |||||||| |||||||||
Sbjct 2370 TCGCAGCGGAATGCGGTGAAATTCCCGGTTTTG 2402
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9953014302
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5