BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932839
Length=1181
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64840.1 | Symbols: | Protein of unknown function (DUF295) ... 619 2e-176
AT2G24250.1 | Symbols: | Protein of unknown function (DUF295) ... 344 1e-93
> AT1G64840.1 | Symbols: | Protein of unknown function (DUF295)
| chr1:24093558-24095399 FORWARD LENGTH=1637
Length=1637
Score = 619 bits (335), Expect = 2e-176
Identities = 559/665 (84%), Gaps = 24/665 (4%)
Strand=Plus/Plus
Query 527 GGAGGAGAAGAATTTGTTGTGC-TCCTCAACTACAC-TAAAAATTTGTAT-GTGTTAAGA 583
|||||||| ||||| ||||||| || || |||| | ||| |||||| | ||||| |||
Sbjct 740 GGAGGAGACGAATTCGTTGTGCTTCTTC-GCTAC-CGTAATCATTTGT-TGGTGTTGAGA 796
Query 584 AGCACTGAAATGAGATGGATGAAGCTTAAGGTAACAT-CAGATGCTTCATGCTCGGATTT 642
|| |||||||||| ||||||||| | ||| ||| | || |||||||||| || |||
Sbjct 797 AGTTCTGAAATGAGGTGGATGAAGGTCAAGAAAACCTCCA-TTGCTTCATGCAAGGGTTT 855
Query 643 AGTC-GCTTTTAGAGGCAGATTTTATGCAGCCTTTCTCAACGGGGACATTTTCATTTTCG 701
|||| | ||||||||| |||||||||| | | ||||| ||||||||||||| | ||||||
Sbjct 856 AGTCAG-TTTTAGAGGTAGATTTTATGTAACTTTTCTTAACGGGGACATTTACGTTTTCG 914
Query 702 ATCCTTATTCAATGCAACGGACTCCCCTGGTGCCCTCTGAGCCTC-GACGATCAAGCAAT 760
|||||||||| || ||| ||||| |||| ||||||| ||||||| | || || |||||
Sbjct 915 ATCCTTATTCGTTGGAACAGACTCTCCTGATGCCCTCAGAGCCTCTG-CGCTCGAGCAAG 973
Query 761 TATCTGATTCCATCTGGCAATGATGAGCTTTTTCTGGTTGAGAAATTCAACCCATTTCCT 820
|||||||||||| ||||| |||||||||||| ||||||||||| |||||||||||||||
Sbjct 974 TATCTGATTCCAAATGGCAGTGATGAGCTTTTCCTGGTTGAGAAGTTCAACCCATTTCCT 1033
Query 821 GAATG-TGGTCG-AATAGATTTTAAG-CGGTTCATATGTAGAGTGAGTAGGCTAGATGAG 877
||| | || | | | | || ||| || |||||| |||||||||||||||||||||||||
Sbjct 1034 GAA-GCTGAT-GTATTGGA-TTTGAGTCGGTTCGCATGTAGAGTGAGTAGGCTAGATGAG 1090
Query 878 GAAGCTGGTAAATGGGTTGTGGTCAGT-GATTTGGGAGACTGTGTTTTGTTTATTGGACA 936
|| |||||| ||||||||| ||| | | |||||||||||| |||| ||||||||||||||
Sbjct 1091 GAGGCTGGTCAATGGGTTGAGGTGA-TCGATTTGGGAGACCGTGTGTTGTTTATTGGACA 1149
Query 937 CTTTGGAAATATTTGCTGCTCGGCTAAGGAGCTTCCTCATGACTGCGGTGTGAGTGGGAA 996
|||||||||| | |||||||| ||||||||||||||| ||| || ||||||||||||||
Sbjct 1150 CTTTGGAAATGTCTGCTGCTCAGCTAAGGAGCTTCCTGATGGTTGTGGTGTGAGTGGGAA 1209
Query 997 CTCAATTTTGTTCACCAATGAACCAGGCAATGTAACTTTTGCCTACAAATATGGAGTGCA 1056
||||||||||||||||||||| |||||| ||||||| |||||||| ||||| ||||| ||
Sbjct 1210 CTCAATTTTGTTCACCAATGAGCCAGGCTATGTAACGTTTGCCTATAAATACGGAGTACA 1269
Query 1057 GACAGGAAGGGCTGAAGACGACCTTAAT-TGTTGGAGATTATCAAGACAGATTCGTGTGA 1115
||||||||||| |||||||| |||||| | ||||||||| |||||| | || || || |
Sbjct 1270 TACAGGAAGGGCGGAAGACGAACTTAATAT-TTGGAGATTCTCAAGAGAAATACGAGTAA 1328
Query 1116 CGATCCTCAACACATTTCCAGTTGTGGCTCTCCGGCTTGAGTGACAAGCTAAAAA-CTCA 1174
|||| ||||||||||||| ||||||||||| ||||||||| | |||||| |||| |||
Sbjct 1329 TGATCGTCAACACATTTCCTGTTGTGGCTCTTCGGCTTGAGAGGCAAGCTGAAAATCTC- 1387
Query 1175 GCTTT 1179
|||||
Sbjct 1388 GCTTT 1392
> AT2G24250.1 | Symbols: | Protein of unknown function (DUF295)
| chr2:10313286-10314910 REVERSE LENGTH=1335
Length=1335
Score = 344 bits (186), Expect = 1e-93
Identities = 608/799 (76%), Gaps = 79/799 (10%)
Strand=Plus/Plus
Query 49 ATCATCAATGATGCCTGACTGGTCTCAGCTCCCGGATGAGCTACTAAACCTTATCTCCAA 108
|||||| || ||||| ||||||||||||||||| || |||||||| || |||||| |||
Sbjct 87 ATCATCGATAATGCCAGACTGGTCTCAGCTCCCTGAAGAGCTACTTCACATTATCT-CAA 145
Query 109 -GAATCT---GGA-CAACTGTTTTGATGTTCTTCATGCTCGTTCTGTTTGCCGTTCGTGG 163
| |||| ||| | ||| ||| |||| | ||||||| || ||||||||||| || |||
Sbjct 146 CGCATCTAGAGGATC-ACTATTTCGATGCTGTTCATGCCCGCTCTGTTTGCCGCTCATGG 204
Query 164 CGATCAACGTTTCCCTTTCCTTGTTGC-CTATTACGCCCGAGTTACTCTCTTCCCGCTTT 222
||||| || ||||| ||||||| || | |||||||||| ||||||||||||||||| |
Sbjct 205 CGATCCACATTTCCATTTCCTTCTT-CTCTATTACGCCAAAGTTACTCTCTTCCCGC--T 261
Query 223 CGCCGACTTCCCTTTTGTAAGCGAAGACTT-T--TGCACCCTCGAGAAGATCCATTTGTT 279
|||||||| | |||| ||||||| | |||||||| |||||| ||| ||||||
Sbjct 262 -------TTCCCTTTAGAAAGCAAAGACTTGTGCTGCACCCTGGAGAAGGTCCCTTTGTT 314
Query 280 CCTCTATAGAGTTCGAA--CC-CCTGCTGCTGC-G-T--TACCATCCGCGTATTTTCTGG 332
||||| |||||||| || || |||| |||||| | | | || |||| ||||||||||
Sbjct 315 CCTCTTTAGAGTTCTAACTCCTCCTGATGCTGCTGATGCTTCC-TCCGAATATTTTCTGG 373
Query 333 GAGGAATAGGTCGAGATGAGTCAGAGGATCATATGGAGCTTCCATCTCCTCTTCAGTGCT 392
||||| |||| | |||| ||||| | |||||| |||||||||||||||||||||||||||
Sbjct 374 GAGGATTAGGCCAAGATAAGTCAAATGATCATGTGGAGCTTCCATCTCCTCTTCAGTGCT 433
Query 393 CAGTGAGAGTGAAAAT-CCGAGGATCTGATCCTACCTTGATGAACATTG-TCGGCTGCCA 450
|||||| ||| || | || |||| |||| || | ||||||||||| | | | ||||||
Sbjct 434 CAGTGAAAGTCAATGTTCC-AGGAACTGAGCCAATTTTGATGAACAT-GCTTGACTGCCA 491
Query 451 GATTGTCCCTCTGGGATATCAA-TACAGAATGATG---GGTTGGGATCCTGAAAAATTG- 505
||| |||||||||| || || |||||| ||||| ||||| |||||||| |||
Sbjct 492 GATCATCCCTCTGGGCCAT-AAGTACAGATTGATGATCGGTTGCAATCCTGAAGAATACA 550
Query 506 G-GCAACAGAT-TACAGG-AG--G-----GG-GGAGGAGAAGAATTTGTTGTGCTCCTCA 554
| ||| | | | | | | | || ||||||| ||||| |||| |||||||
Sbjct 551 GTGCAGCTTTTCTTCCGCTAAACGAACAAGGAGGAGGAGGCGAATTCGTTGCGCTCCTCG 610
Query 555 ACTACACTAAAAATTTGTAT--G-TGTTAAGAAGCACTGAAATGAGATGGATGAAGCTTA 611
||| |||| | ||||| | | |||||||||| ||||||||||||||||| ||||
Sbjct 611 ACTGCACTGA---TTTGTTTTTGGTGTTAAGAAGTACTGAAATGAGATGGATTCGGCTTG 667
Query 612 AGGTAACA-TCAGA-TGCTTCATGCTC-GGATTTAGTCGCTTTTAGAGGCAGATTTTATG 668
|| ||| ||| | ||||||||| | ||| ||| || |||||||||| || || ||||
Sbjct 668 AGA-AACCCTCA-ACTGCTTCATG-TAAGGAGTTATTCACTTTTAGAGGAAGGTTCTATG 724
Query 669 CAGCCTTTCTC-AACGGGGACATTTTCATTTTCGATCCTTATTCAATGCAA-CGGACTCC 726
|| | ||||| || ||||||| ||| || ||||||||| ||| || || || |||||
Sbjct 725 CAAC-TTTCTTTAATGGGGACACGTTCGTTATCGATCCTTCTTCGCTGGAAGCG-ACTCC 782
Query 727 CCTGGTGCCCTC-TGAGCCTCGACGATC-AAGCAATTATCTGATTCCATCTGGCAATGAT 784
||| || || | | ||||| || || | || |||| ||||||||||||||||
Sbjct 783 CCTAACACC-TCAT-A---TCGAC--TCCAA-C--TT-TCTGGTTCCATCTGGCAATGAG 831
Query 785 GAGCTTTTTCTGGTTGAGA 803
|||||||| |||||| |||
Sbjct 832 GAGCTTTTCCTGGTTAAGA 850
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57981629475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5