BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932840

Length=544
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G64840.1 | Symbols:  | Protein of unknown function (DUF295) ...   206    2e-52
  AT2G24255.1 | Symbols:  | unknown protein; CONTAINS InterPro DO...  73.1    3e-12


> AT1G64840.1 | Symbols:  | Protein of unknown function (DUF295) 
| chr1:24093558-24095399 FORWARD LENGTH=1637
Length=1637

 Score =  206 bits (111),  Expect = 2e-52
 Identities = 218/268 (81%), Gaps = 13/268 (5%)
 Strand=Plus/Plus

Query  263   CGATTTGGGAGACCGTGTGTTCTTTATTGGAC-GTTTGGGAAATATCTGGTGCTCGGCTA  321
             ||||||||||||||||||||| ||||||||||  ||| |||||| |||| ||||| ||||
Sbjct  1117  CGATTTGGGAGACCGTGTGTTGTTTATTGGACACTTT-GGAAATGTCTGCTGCTCAGCTA  1175

Query  322   AGGAGCTTCCTGATGGTTGTGGTGTGAGTGGTAACTCAATTCTGTTCACCAATGGGCCAG  381
             ||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||
Sbjct  1176  AGGAGCTTCCTGATGGTTGTGGTGTGAGTGGGAACTCAATTTTGTTCACCAATGAGCCAG  1235

Query  382   AAAATGTAAC-TTTATTTTATATATATGGAGAACATACAGGAAACGCAGAAGACGACCTC  440
                ||||||| |||   | ||| ||| |||| |||||||||||  || |||||||| || 
Sbjct  1236  GCTATGTAACGTTTGCCT-ATAAATACGGAGTACATACAGGAAGGGCGGAAGACGAACTT  1294

Query  441   AATATATTG-AGATCCACTAGAGCGACCCGTGTGATAATCCTCAACAAATCACCTCCAGT  499
             ||||| ||| |||| | | ||||  |  || || || ||| |||||| ||  |||   ||
Sbjct  1295  AATAT-TTGGAGATTCTCAAGAGAAATACGAGTAATGATCGTCAACACATTTCCT---GT  1350

Query  500   TGTGGCTCTACAGG-TTGAG-GGCTAAG  525
             ||||||||| | || ||||| ||| |||
Sbjct  1351  TGTGGCTCTTC-GGCTTGAGAGGC-AAG  1376


> AT2G24255.1 | Symbols:  | unknown protein; CONTAINS InterPro 
DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); 
BEST Arabidopsis thaliana protein match is: Protein of 
unknown function (DUF295) (TAIR:AT1G64840.1); Has 124 Blast 
hits to 121 proteins in 7 species: Archae - 0; Bacteria - 
0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other 
Eukaryotes - 0 (source: NCBI BLink). | chr2:10315515-10317353 
REVERSE LENGTH=1511
Length=1511

 Score = 73.1 bits (39),  Expect = 3e-12
 Identities = 88/111 (79%), Gaps = 6/111 (5%)
 Strand=Plus/Plus

Query  143  GCAGCTTAAGAAAATCTCAAATTC-ATCATGCCATGATTTAGTCACTTTTAGAGGCAGAT  201
            ||||||| ||||  || || || | || ||||  |||| |||||||||||||||||||||
Sbjct  667  GCAGCTTGAGAACGTCCCATATACTAT-ATGCGTTGATATAGTCACTTTTAGAGGCAGAT  725

Query  202  TTTATGCAGTCTTTCTTAACGGGA-ACAT-GTTTGTTATCGATCGGTATTC  250
            |||||||| | ||||||  | ||| | || ||  ||||||||||  |||||
Sbjct  726  TTTATGCACTTTTTCTTT-CAGGACAAATCGTC-GTTATCGATCCTTATTC  774



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26071522293


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5