BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932841
Length=1207
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64840.1 | Symbols: | Protein of unknown function (DUF295) ... 438 5e-122
> AT1G64840.1 | Symbols: | Protein of unknown function (DUF295)
| chr1:24093558-24095399 FORWARD LENGTH=1637
Length=1637
Score = 438 bits (237), Expect = 5e-122
Identities = 810/1074 (75%), Gaps = 90/1074 (8%)
Strand=Plus/Plus
Query 124 ACAAGTGTTTCGATATTGTTCATGCTCGTTCCGTTTGCCGCCT-GTGGCGAT-C-AATCT 180
|||| ||||| ||| | ||||||||||| || |||| || | |||||||| | || |
Sbjct 309 ACAACTGTTTTGATGTCGTTCATGCTCGATCTATTTGTCG-TTCGTGGCGATCCGCAT-T 366
Query 181 TCCCCTTTCCTTCTTGCCTCT-TACGCCCACGTGAATTTATTCCCACGTTTGCCT-A-TT 237
| |||||||||||| || | | || || | || | | | |||||||||||| || | ||
Sbjct 367 T-CCCTTTCCTTCTAGCTTATCAAC-CCTAAGTTACTCTCTTCCCACGTTTG-CTAAGTT 423
Query 238 ACCC-TTACCTAAGCAGAGAATTATGCACCCTCGAGAAGATCCCTTTGTTCCTCTTTAGA 296
||| ||| |||||| ||| || || || ||| ||||||||| | ||||||||||||
Sbjct 424 -CCCATTA-GTAAGCAAAGACTTGTGTACACTCAAGAAGATCCAAATCTTCCTCTTTAGA 481
Query 297 G-TCAAAACTCATGCTACGTCGACT-T--CTAAGTATTTTCTGGGAGGAATAGGCCGAGA 352
| || |||| | |||| | | || | | | |||||||||| |||||||||| || |||
Sbjct 482 GCTCGAAAC-CCTGCTGC-T-GA-TATACCCGAGTATTTTCTTGGAGGAATAGACCAAGA 537
Query 353 TGAGTCAAAAGATCATATGGAGCTTCTTCCATCTACTATTCAGTGCTCAGTGAAAGTGAC 412
| ||||||| ||||||||||| ||||||||| || |||| || || ||||||||||
Sbjct 538 TCAGTCAAATGATCATATGGA---ACTTCCATCTCCTCTTCAATGTTCTGTGAAAGTGAA 594
Query 413 GATCCCA-AGATGTGATCCAACCTTGATTAAAATGCTAGACTGCCAGATCATCCCTCTT- 470
| ||||| | || ||||||| |||| | || ||||| |||| ||||||||| ||| ||
Sbjct 595 GTTCCCACA-ATCTGATCCATTCTTGGTGAACATGCTTGACTACCAGATCATTCCT-TTA 652
Query 471 GGCCATCAGTATAGAATGATTGGTT--G---C--AATC-CT---AAA-GGTTACAAAGGC 518
||| ||| || | |||||| |||| | | |||| | ||| |||||| ||||
Sbjct 653 GGCTTTCAATACATAATGATCGGTTGGGATCCTGAATCATTGGCAAATGGTTACGTAGGC 712
Query 519 GTGGCTTATCTTCCGCTAAATAAGAA--G-GGA-A--AATTCGTTGTGC-TCCTCAATTA 571
|| |||| ||||||| |||| ||||| | ||| | |||||||||||| || || ||
Sbjct 713 GTTGCTTTTCTTCCGGTAAAGAAGAACGGAGGAGACGAATTCGTTGTGCTTCTTC-GCTA 771
Query 572 CAC-TAAAGTTTTGTTGGTGTTAAGAAGTAGAGACAA-GATATGGATG-CGGTTTAGTAA 628
| | ||| |||||||||||| |||||| || || || |||||| ||| || ||
Sbjct 772 C-CGTAATCATTTGTTGGTGTTGAGAAGTTCTGA-AATGAGGTGGATGAAGGTCAAG-AA 828
Query 629 CATCTCAAAGGCTTCATGCGATTATTTAGT-GGCTTTTAGAGGCAGATTTTATGCATCCT 687
| ||| | ||||||||| | |||||| | ||||||||| |||||||||| | | |
Sbjct 829 AACCTCCATTGCTTCATGCAAGGGTTTAGTCAG-TTTTAGAGGTAGATTTTATGTAACTT 887
Query 688 TTCTTAACAGGGACATTTTCGTTATCCATCCTTATTCGAT-GAA-AGTAACTC-CGCTTA 744
|||||||| ||||||||| |||| || ||||||||||| | ||| || |||| | || |
Sbjct 888 TTCTTAACGGGGACATTTACGTTTTCGATCCTTATTCGTTGGAACAG--ACTCTC-CTGA 944
Query 745 TGCCCT-TGCATCATTTGTACCCT-GATTCACACATTTATCTGGTTCCATCTGGCAATGA 802
|||||| | | | | || | || || || | |||||| ||||| ||||| |||
Sbjct 945 TGCCCTCAG-AGCCTCTG--CGCTCGA---GCA-A-GTATCTGATTCCAAATGGCAGTGA 996
Query 803 TGAGCTTTTCCTAGTTGAG-CGCATCATTATCCCAAGTAATGGTGTTGGTGTATTGGATT 861
|||||||||||| |||||| | ||| | |||| | || | || |||||||||||
Sbjct 997 TGAGCTTTTCCTGGTTGAGAAG-TTCA--A-CCCATTTCCTGAAGCTGATGTATTGGATT 1052
Query 862 TTAGTCGGTTTACATGTAGAGTGTGTAGACTTGACGAGGAAGCTGGTAAATGGGTCGTTG 921
| |||||||| ||||||||||| |||| || || ||||| |||||| ||||||| | |
Sbjct 1053 TGAGTCGGTTCGCATGTAGAGTGAGTAGGCTAGATGAGGAGGCTGGTCAATGGGTTGAGG 1112
Query 922 TCAGCGATTTGGGAGATCGTGTATTGTTTATTGGAGAGTTTGGAAATACCT-CTTGCCCG 980
| | |||||||||||| ||||| |||||||||||| | ||||||||| || | ||| |
Sbjct 1113 TGATCGATTTGGGAGACCGTGTGTTGTTTATTGGACACTTTGGAAATGTCTGC-TGCTCA 1171
Query 981 GCTAAGGAGCTTCCTGATGGTTGCGGTGTGAGTGGGAACTCAATTTTGTTCACCAATGGG 1040
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1172 GCTAAGGAGCTTCCTGATGGTTGTGGTGTGAGTGGGAACTCAATTTTGTTCACCAATGAG 1231
Query 1041 CCAGGAAATGTATC-TTT-CTTTTATAAGTATAGATTA-AGTTCAGAAAATGTGAAAGAC 1097
||||| ||||| | ||| | | || || || || || | | ||| || | | |||||
Sbjct 1232 CCAGGCTATGTAACGTTTGCCTATA-AA-TACGGAGTACA-TACAGGAAGGGCGGAAGAC 1288
Query 1098 GACCTCAGTCTTTTGAGATTCTCAAGAGAGAAT-CGTGTGATAATTCGT-AACA 1149
|| || | | ||| ||||||||||||||| ||| || || || || ||| ||||
Sbjct 1289 GAACTTAATATTTGGAGATTCTCAAGAGA-AATACGAGTAATGAT-CGTCAACA 1340
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59286843645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5