BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932842
Length=1184
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64840.1 | Symbols: | Protein of unknown function (DUF295) ... 525 4e-148
AT2G24255.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 353 2e-96
> AT1G64840.1 | Symbols: | Protein of unknown function (DUF295)
| chr1:24093558-24095399 FORWARD LENGTH=1637
Length=1637
Score = 525 bits (284), Expect = 4e-148
Identities = 890/1168 (76%), Gaps = 100/1168 (9%)
Strand=Plus/Plus
Query 69 TGCCAGAA-TGGTCTCTTCTACCGGAGGAGTTACTTCAA-ATTGTGTCCAAAAATGTGGA 126
||||| || ||||||| || ||||| ||| ||| |||| || | ||||| ||| | ||
Sbjct 252 TGCCA-AACTGGTCTCAGCTCCCGGAAGAGCTAC-TCAACCTTATCTCCAAGAATCTAGA 309
Query 127 GAACTGTTTTGATGTTGTTCATGCTCGGTCGGTTTG-CAACTCGTGGCGATCCTTATTTA 185
|||||||||||||| ||||||||||| || |||| | |||||||||||| ||||
Sbjct 310 CAACTGTTTTGATGTCGTTCATGCTCGATCTATTTGTC-GTTCGTGGCGATCCGCATTTC 368
Query 186 CCTTTCCTTCTTGCCTAT-TACGCCCAAGTTACTCTCTTCCCACATTCGAC-GAGTTCAC 243
||||||||||| || ||| || || |||||||||||||||||| || | | ||||| |
Sbjct 369 CCTTTCCTTCTAGCTTATCAAC-CCTAAGTTACTCTCTTCCCACGTTTG-CTAAGTTC-C 425
Query 244 TC-TT-GAAAGCAAAGACTTGTGCAC-CTTCGAGAAGGTCCCTTTGTTCGTCTTTAGAG- 299
| || | ||||||||||||||| || | || ||||| ||| | ||| |||||||||
Sbjct 426 -CATTAGTAAGCAAAGACTTGTGTACAC-TCAAGAAGATCCAAATCTTCCTCTTTAGAGC 483
Query 300 TCAAAACTCCTGCTGCTTCTACGTCGCCTTTTGAGTATTTTCTAGGAGGCATAGGCC--G 357
|| |||| ||||||||| || | || ||||||||||| ||||| |||| || |
Sbjct 484 TCGAAAC-CCTGCTGCTGATA--T-ACC---CGAGTATTTTCTTGGAGGAATAGACCAAG 536
Query 358 ---AG----ATGATCATATGGATCGTCCATCTCCCCTTCAATGTTCAGTGAAAGTGGAGA 410
|| ||||||||||||| | ||||||||| ||||||||||| ||||||||| ||
Sbjct 537 ATCAGTCAAATGATCATATGGAACTTCCATCTCCTCTTCAATGTTCTGTGAAAGTGAAGT 596
Query 411 TCCCAGGATTTGATTCAACCTTGATGAACATGCTAGATTGCCAGATC-CTCTCTCTAGGC 469
||||| || |||| || |||| |||||||||| || | ||||||| || || |||||
Sbjct 597 TCCCACAATCTGATCCATTCTTGGTGAACATGCTTGACTACCAGATCATTC-CTTTAGGC 655
Query 470 CATCAGTATAGATTGATCGGTTGGGAACCT-AA--A---G---A---TTACAAAGGCGTG 517
||| || | | ||||||||||||| ||| || | | | |||| ||||||
Sbjct 656 TTTCAATACATAATGATCGGTTGGGATCCTGAATCATTGGCAAATGGTTACGTAGGCGTT 715
Query 518 GCTTTTCTTCCGCTTAACAAGGAGGGAAGAGAAGGGGAATTCGTTGTGATTC-TCAATTA 576
|||||||||||| | || ||| | || || | || |||||||||||| ||| || ||
Sbjct 716 GCTTTTCTTCCGGTAAAGAAGAACGG-AG-G-AGACGAATTCGTTGTGCTTCTTC-GCTA 771
Query 577 CAC-TAA-CGTTTTGATGGTGTTAACAAGTGCGGAAATGAAGTGGAAG-CGGCTTGAGAA 633
| | ||| | |||| ||||||| | |||| | ||||||| ||||| | || | ||||
Sbjct 772 C-CGTAATC-ATTTGTTGGTGTTGAGAAGTTCTGAAATGAGGTGGATGAAGG-TCAAGAA 828
Query 634 TGTC-CCATATGCTAT-ATGCTCGGATTTAGTCACTTTTAGAGGTAGGTTTTATGCAGCC 691
| |||| |||| | |||| || |||||||| |||||||||||| ||||||| | |
Sbjct 829 AACCTCCAT-TGCT-TCATGCAAGGGTTTAGTCAGTTTTAGAGGTAGATTTTATGTAACT 886
Query 692 TTTCTTAGCAGAAATACTTT-CGTTATCGATCCTTATTCGCTGGAGGTGACTCTTCTAAT 750
||||||| | | | | ||| |||| |||||||||||||| |||| |||||| || ||
Sbjct 887 TTTCTTAACGGGGACA-TTTACGTTTTCGATCCTTATTCGTTGGAACAGACTCTCCTGAT 945
Query 751 GCCCTC--A-CCTCATAAGCAACTA--AACTATCTGGTTGCATCTGGCAATGATGAACTC 805
|||||| | |||| | || | | || |||||| || || ||||| |||||| ||
Sbjct 946 GCCCTCAGAGCCTC-TGCGC-TCGAGCAAGTATCTGATTCCAAATGGCAGTGATGAGCTT 1003
Query 806 TTCTTGGTTGAG--G-T-AA-CCA--TCCCAAATTTTGAGGTAATAGATTTTAGCCGGTT 858
||| |||||||| | | || ||| ||| || ||| ||| | ||||| || |||||
Sbjct 1004 TTCCTGGTTGAGAAGTTCAACCCATTTCCTGAA-GCTGATGTATTGGATTTGAGTCGGTT 1062
Query 859 CACATGCATAGTGAGTAGGCTAGATGAGGAGGATAGTAAATGGATTGAGGTCACCGATTT 918
| |||| | ||||||||||||||||||||||| | || ||||| ||||||| | ||||||
Sbjct 1063 CGCATGTAGAGTGAGTAGGCTAGATGAGGAGGCTGGTCAATGGGTTGAGGTGATCGATTT 1122
Query 919 GGGAGACCGTGTGTTGTTTATTGGACACTTTGGAAATGTCT-CTTGCTCGGCTAAGGAAC 977
||||||||||||||||||||||||||||||||||||||||| || |||| |||||||| |
Sbjct 1123 GGGAGACCGTGTGTTGTTTATTGGACACTTTGGAAATGTCTGCT-GCTCAGCTAAGGAGC 1181
Query 978 TTCCTGATGGTTGTGGTCTGAGGGGGAACACAATTCTGTTCACCAATGAGCCAA-CT-T- 1034
||||||||||||||||| |||| |||||| ||||| ||||||||||||||||| || |
Sbjct 1182 TTCCTGATGGTTGTGGTGTGAGTGGGAACTCAATTTTGTTCACCAATGAGCCAGGCTATG 1241
Query 1035 T----T--GCTTATAAATATGAAGTAGATACTGGAAGCGCGGGAGACGATCTCAAT-TGT 1087
| | || |||||||| | |||| |||| ||||| |||| |||||| || ||| | |
Sbjct 1242 TAACGTTTGCCTATAAATACGGAGTACATACAGGAAGGGCGGAAGACGAACTTAATAT-T 1300
Query 1088 TGGAGATCCACAAGGGAGAAT-CGTGTT-TCGATCCTCAATACATCTCCGGTTTTGGCTC 1145
||||||| | |||| || ||| || || | |||| |||| |||| ||| ||| ||||||
Sbjct 1301 TGGAGATTCTCAAGAGA-AATACGAGTAAT-GATCGTCAACACATTTCCTGTTGTGGCTC 1358
Query 1146 TCCAAG-TTGAGCG-CTAAGCCGAAAAT 1171
| | | ||||| | | |||| ||||||
Sbjct 1359 TTCG-GCTTGAGAGGC-AAGCTGAAAAT 1384
> AT2G24255.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174);
BEST Arabidopsis thaliana protein match is: Protein of
unknown function (DUF295) (TAIR:AT1G64840.1); Has 124 Blast
hits to 121 proteins in 7 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr2:10315515-10317353
REVERSE LENGTH=1511
Length=1511
Score = 353 bits (191), Expect = 2e-96
Identities = 459/582 (79%), Gaps = 44/582 (8%)
Strand=Plus/Plus
Query 453 AGATCCTCTCTCTAGGCCATCAGTATAGATTGATCGGTTGGGAACCTAAAGATTACAAAG 512
||||| || || | |||||| |||| ||| |||||||||||||| || | | | |
Sbjct 507 AGATCATCCCTTTGGGCCATAAGTACAGAATGATCGGTTGGGAA--TATA-A-T-C---- 557
Query 513 GCGTGGCTTTTCTTCCGCTTA-ACAAGGAGGGAAG-AGAAGGGGAATTCGTTGTGATTCT 570
||| | ||||||||| || || ||||||||||||| || ||| ||||| |||||| ||||
Sbjct 558 GCGCGACTTTTCTTCGGC-TAGACAAGGAGGGAAGAAG-AGGAGAATTTGTTGTGCTTCT 615
Query 571 C-AATTACACTAACGTTTTGATGGTGTTAACAAGTGCGGAAATGAAGTGGAAGCGGCTTG 629
| || | | || || |||| |||||||||||||||| ||||||| |||||||| |||||
Sbjct 616 CGAAGT-CTCTGACACTTTGCTGGTGTTAACAAGTGCTGAAATGAGGTGGAAGCAGCTTG 674
Query 630 AGAATGTCCCATATGCTATATGC-TCGGATTTAGTCACTTTTAGAGGTAGGTTTTATGCA 688
|||| ||||||||| |||||||| | ||| |||||||||||||||| || |||||||||
Sbjct 675 AGAACGTCCCATATACTATATGCGT-TGATATAGTCACTTTTAGAGGCAGATTTTATGCA 733
Query 689 GC-CTTTC-TT-AGCAGAAATACTTTCGTTATCGATCCTTATTCGCTGGAGGTGACTCTT 745
| |||| || || | |||| | |||||||||||||||||||||||||||||||||||
Sbjct 734 -CTTTTTCTTTCAGGACAAAT-C-GTCGTTATCGATCCTTATTCGCTGGAGGTGACTCTT 790
Query 746 CTAATGCCCTCACCTCATAAGCAACTA-AACTA---TCT--GGTTGCATCTGGCAATGAT 799
|| || |||||||||| | | | | || || ||| |||| ||| |||||| |||
Sbjct 791 CTGTTGTCCTCACCTCAGGACCCGCGAGAATTACGGTCTCTGGTTCCATATGGCAAAGAT 850
Query 800 GAACTCTTCTTGGTTGAGGTAACCATCCCAAATTTTGAGGTAATAGATTTTAGCCGGTTC 859
||||| ||| |||||||||||| |||||||||| || |||||||| ||||| |||||
Sbjct 851 GAACTTTTCCTGGTTGAGGTAATCATCCCAAATGATGTTGTAATAGACTTTAGTCGGTT- 909
Query 860 A-CAT-GCATAGTGAGTAGGCTAGATGAGGAGGATAGTAAATGGATTGAGGTCACCGATT 917
| | | | | |||||| ||| |||||||| ||| | |||||||| |||||||| ||||
Sbjct 910 AGC-TCGTAGAGTGAGGAGGGTAGATGAGAAGGCTGGTAAATGGGTTGAGGTCGGTGATT 968
Query 918 TGGGAGACCGTGTGTTGTTTATTGGACACTTTGGAAATGTCTCTTGCTCGGCTAAGGAAC 977
|||||||| |||| ||||| | | || |||||| ||||||||||||||||||||
Sbjct 969 TGGGAGACTGTGTATTGTT-A-----C--TT-GGAAATCTCTCTTGCTCGGCTAAGGAAT 1019
Query 978 TTCCT-GATGGTTGTGGTCTGAGGGGGAACACAATTCTGTTC 1018
||||| | |||| |||| ||| | |||| || || |||||
Sbjct 1020 TTCCTCGG-GGTTTTGGTTTGACTGAGAACGCAGTTTTGTTC 1060
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58132231110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5