BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg932845 Length=1174 Score E Sequences producing significant alignments: (Bits) Value AT1G64840.1 | Symbols: | Protein of unknown function (DUF295) ... 638 0.0 AT2G24255.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 230 3e-59 > AT1G64840.1 | Symbols: | Protein of unknown function (DUF295) | chr1:24093558-24095399 FORWARD LENGTH=1637 Length=1637 Score = 638 bits (345), Expect = 0.0 Identities = 864/1103 (78%), Gaps = 82/1103 (7%) Strand=Plus/Plus Query 87 GACAACTGTTTCGATGTTGTTCACGCTCGCTCTGTTTGCAC-CTCGTGGCGATCCTCATT 145 ||||||||||| ||||| ||||| ||||| ||| |||| | |||||||||||| |||| Sbjct 308 GACAACTGTTTTGATGTCGTTCATGCTCGATCTATTTG-TCGTTCGTGGCGATCCGCATT 366 Query 146 TCCCTTTCCTTGTTGCCTT-T-TACGCCCAAGTTATTCTCTTCCCTCGTTCGCTGATTTC 203 ||||||||||| | | ||| | || || |||||| ||||||||| |||| ||| | ||| Sbjct 367 TCCCTTTCCTTCTAG-CTTATCAAC-CCTAAGTTACTCTCTTCCCACGTTTGCTAAGTTC 424 Query 204 CC-TTCAGAAAGCAAAGACTTGTGCACCCTGGAGAAGATCCCTTTGTTCCTCTTTAGAG- 261 || || || ||||||||||||||| || || ||||||||| | ||||||||||||| Sbjct 425 CCATT-AGTAAGCAAAGACTTGTGTACACTCAAGAAGATCCAAATCTTCCTCTTTAGAGC 483 Query 262 TC-AAA-ACTCCTGCT-ACATCACCGTCTATGTATTATCTGGGA-GACATTGGCCGAGAT 317 || ||| || ||||| | || ||| | | ||||| ||| ||| || || | || |||| Sbjct 484 TCGAAACCCTGCTGCTGATAT-ACC--CGA-GTATTTTCTTGGAGGA-ATAGACCAAGAT 538 Query 318 AACTCAGAGGATCATAT-GAAGCATCCATCCCCGCTTCAATGTTCGGT-AAGAATGAAGA 375 | ||| | |||||||| ||| | |||||| || ||||||||||| || || | ||||| Sbjct 539 CAGTCAAATGATCATATGGAA-CTTCCATCTCCTCTTCAATGTTCTGTGAA-AGTGAAGT 596 Query 376 TACCAGGATCTGATCCAACCTTAATGAACATGCTAGACTGCCAGATCCTAT-CTCTAGGC 434 | ||| |||||||||| ||| |||||||||| |||| ||||||| | | || ||||| Sbjct 597 TCCCACAATCTGATCCATTCTTGGTGAACATGCTTGACTACCAGATCAT-TCCTTTAGGC 655 Query 435 CATCAGTACAAAATGATCAGTTGGGATCCTCACTCATTGGCAACCA-GGTTCA-G-AGGC 491 ||| |||| ||||||| ||||||||||| | |||||||||| | |||| | | |||| Sbjct 656 TTTCAATACATAATGATCGGTTGGGATCCTGAATCATTGGCAA--ATGGTT-ACGTAGGC 712 Query 492 GTGGCTGTTCTTCCGCTAAACAaggagggaggaggaggaggaTTTGTTGTGCTT-ATCGG 550 || ||| |||||||| |||| ||| | |||||| || || ||| ||||||||| || | Sbjct 713 GTTGCTTTTCTTCCGGTAAAGAAGAACGGAGGA-GACGA--ATTCGTTGTGCTTCTTC-G 768 Query 551 CTATTC-TCATGATTTGTTGGTGTTAAAAAGTGCTGAAAGGAGATGGATG--CGTCTTGA 607 ||| | | || ||||||||||||| | |||| |||||| ||| |||||| ||| | Sbjct 769 CTA-CCGTAATCATTTGTTGGTGTTGAGAAGTTCTGAAATGAGGTGGATGAAGGTC--AA 825 Query 608 GAAAACCTCAATAGCTACTTGCTCGGGTATAGTCACTTTTAGAGGCAGATTTTATG-CAT 666 ||||||||| || ||| | ||| |||| |||||| ||||||||| |||||||||| | Sbjct 826 GAAAACCTCCATTGCTTCATGCAAGGGTTTAGTCAGTTTTAGAGGTAGATTTTATGTAAC 885 Query 667 TCTTTCTCAACGGGGACATTTTCGTTATCGATCCTTATTCGCTGGAAGC-GACTC-CCTT 724 | ||||| ||||||||||||| |||| |||||||||||||| ||||| | ||||| || | Sbjct 886 T-TTTCTTAACGGGGACATTTACGTTTTCGATCCTTATTCGTTGGAA-CAGACTCTCC-T 942 Query 725 GATGCCCT-TGCAGCCTCTAAGCTCAATAAATTATCTG-GTCCAATCTGGCAATGATGAA 782 |||||||| | ||||||| |||| | || |||||| ||||| ||||| |||||| Sbjct 943 GATGCCCTCAG-AGCCTCTGCGCTCGAGCAAGTATCTGATTCCAA-ATGGCAGTGATGAG 1000 Query 783 CTTTTTCTTG-T-AG-AG-GCAACCC--TCCCAGATGCTGAAGTAATAGAATTT-AGCCG 835 ||||| || | | || || |||||| | || || ||||| || || | |||| || || Sbjct 1001 CTTTTCCTGGTTGAGAAGTTCAACCCATTTCCTGAAGCTGATGT-ATTGGATTTGAGTCG 1059 Query 836 GTTAACATGCAGAGTGAGTAGGCTAGATGAGGAGGCTGGTGTATGGGTTGTGGTAAGCGA 895 ||| |||| |||||||||||||||||||||||||||||| |||||||| ||| | ||| Sbjct 1060 GTTCGCATGTAGAGTGAGTAGGCTAGATGAGGAGGCTGGTCAATGGGTTGAGGTGATCGA 1119 Query 896 TTTAGGAGACCGTGTATTTTTTATTGGAGAGCAG-GGAAATATC-GCTTGCTCGGCTAAG 953 ||| ||||||||||| || ||||||||| | | |||||| || ||| |||| |||||| Sbjct 1120 TTTGGGAGACCGTGTGTTGTTTATTGGACA-CTTTGGAAATGTCTGCT-GCTCAGCTAAG 1177 Query 954 GAGCTTCCCGATGGTTGTGGTGTGAGTGGGAACTCCATTTTGTTTACTAATTG-GCCAGG 1012 |||||||| |||||||||||||||||||||||||| |||||||| || ||| | |||||| Sbjct 1178 GAGCTTCCTGATGGTTGTGGTGTGAGTGGGAACTCAATTTTGTTCACCAAT-GAGCCAGG 1236 Query 1013 -TGATGTAA--TTTACTTCTGTAAATATGGTGTGCCTACAGGATACGT-GGAAGACGACC 1068 | |||||| ||| | || |||||| || || | ||||||| | | ||||||||| | Sbjct 1237 CT-ATGTAACGTTTGC--CTATAAATACGGAGTACATACAGGA-AGGGCGGAAGACGAAC 1292 Query 1069 TCAACT-TTTGGCGATTCTCAAGAGAG-TATCGTGTGATGATTCGT-AACAAATCTCCTC 1125 | || | ||||| ||||||||||||| || || || ||||| ||| |||| || |||| Sbjct 1293 TTAA-TATTTGGAGATTCTCAAGAGAAATA-CGAGTAATGAT-CGTCAACACATTTCCT- 1348 Query 1126 CCGTGGTGGCTTTTCGGGTTGAG 1148 || |||||| ||||| ||||| Sbjct 1349 --GTTGTGGCTCTTCGGCTTGAG 1369 > AT2G24255.1 | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G64840.1); Has 124 Blast hits to 121 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:10315515-10317353 REVERSE LENGTH=1511 Length=1511 Score = 230 bits (124), Expect = 3e-59 Identities = 399/523 (76%), Gaps = 54/523 (10%) Strand=Plus/Plus Query 499 TTCTTCCGCTAAACAaggagggaggaggaggaggaTTTGTTGTGCTTATCGGCTATTCTC 558 |||||| |||| ||||||||||| || |||||| ||||||||||||| || | | |||| Sbjct 567 TTCTTCGGCTAGACAAGGAGGGAAGAAGAGGAGAATTTGTTGTGCTTCTC-G-AAGTCTC 624 Query 559 ATG--A-TTTGTTGGTGTTAAAAAGTGCTGAAAGGAGATGGATGC-GTCTTGAGAA-AAC 613 || | |||| ||||||||| ||||||||||| ||| |||| || | |||||||| | Sbjct 625 -TGACACTTTGCTGGTGTTAACAAGTGCTGAAATGAGGTGGAAGCAG-CTTGAGAACGTC 682 Query 614 CTCA-ATAGCTACT-TGC-TCGGGTATAGTCACTTTTAGAGGCAGATTTTATGCA-TTCT 669 | || ||| ||| | ||| | | ||||||||||||||||||||||||||||||| || | Sbjct 683 C-CATATA-CTA-TATGCGT-TGATATAGTCACTTTTAGAGGCAGATTTTATGCACTT-T 737 Query 670 TTCTCAACGGGGACATTT--TCGTTATCGATCCTTATTCGCTGGAAGCGACTCC-CTTGA 726 |||| | || ||| | ||||||||||||||||||||||||| | ||||| || | Sbjct 738 TTCTTT-CAGG-ACAAATCGTCGTTATCGATCCTTATTCGCTGGAGGTGACTCTTCT-GT 794 Query 727 TGCCCTTGCAGCCTCTAAG-CTCAATA-AATTA---TCT--GGT-CCAATCTGGCAATGA 778 || ||| || |||| | | | | | ||||| ||| ||| ||| | |||||| || Sbjct 795 TGTCCT--CA-CCTC-AGGACCCGCGAGAATTACGGTCTCTGGTTCCA-TATGGCAAAGA 849 Query 779 TGAACTTTTTCTTGTAGAGGCAACCCTCCCAGATGCTGAAGTAATAGAATTTAGCCGGTT 838 ||||||||| || || |||| || | ||||| ||| || |||||||| ||||| ||||| Sbjct 850 TGAACTTTTCCTGGTTGAGGTAATCATCCCAAATGATGTTGTAATAGACTTTAGTCGGTT 909 Query 839 AACAT-GCAGAGTGAGTAGGCTAGATGAGGAGGCTGGTGTATGGGTTGTGGTAAGCGATT 897 | | | | |||||||| ||| |||||||| |||||||| |||||||| ||| | |||| Sbjct 910 AGC-TCGTAGAGTGAGGAGGGTAGATGAGAAGGCTGGTAAATGGGTTGAGGTCGGTGATT 968 Query 898 TAGGAGACCGTGTATTTTTTA-TTGGAGAGCAGGGAAATATCGCTTGCTCGGCTAAGGAG 956 | |||||| ||||||| || | ||||| | | | || |||||||||||||||| Sbjct 969 TGGGAGACTGTGTATTGTT-ACTTGGA-A--A------TCTCTCTTGCTCGGCTAAGGAA 1018 Query 957 CTTCC-CGATGGTTGTGGTGTGAGTGGGAACTCCA-TTTTGTT 997 |||| || |||| |||| ||| || |||| | | ||||||| Sbjct 1019 TTTCCTCGG-GGTTTTGGTTTGACTGAGAACGC-AGTTTTGTT 1059 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57630225660 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5