BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932845
Length=1174
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64840.1 | Symbols: | Protein of unknown function (DUF295) ... 638 0.0
AT2G24255.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 230 3e-59
> AT1G64840.1 | Symbols: | Protein of unknown function (DUF295)
| chr1:24093558-24095399 FORWARD LENGTH=1637
Length=1637
Score = 638 bits (345), Expect = 0.0
Identities = 864/1103 (78%), Gaps = 82/1103 (7%)
Strand=Plus/Plus
Query 87 GACAACTGTTTCGATGTTGTTCACGCTCGCTCTGTTTGCAC-CTCGTGGCGATCCTCATT 145
||||||||||| ||||| ||||| ||||| ||| |||| | |||||||||||| ||||
Sbjct 308 GACAACTGTTTTGATGTCGTTCATGCTCGATCTATTTG-TCGTTCGTGGCGATCCGCATT 366
Query 146 TCCCTTTCCTTGTTGCCTT-T-TACGCCCAAGTTATTCTCTTCCCTCGTTCGCTGATTTC 203
||||||||||| | | ||| | || || |||||| ||||||||| |||| ||| | |||
Sbjct 367 TCCCTTTCCTTCTAG-CTTATCAAC-CCTAAGTTACTCTCTTCCCACGTTTGCTAAGTTC 424
Query 204 CC-TTCAGAAAGCAAAGACTTGTGCACCCTGGAGAAGATCCCTTTGTTCCTCTTTAGAG- 261
|| || || ||||||||||||||| || || ||||||||| | |||||||||||||
Sbjct 425 CCATT-AGTAAGCAAAGACTTGTGTACACTCAAGAAGATCCAAATCTTCCTCTTTAGAGC 483
Query 262 TC-AAA-ACTCCTGCT-ACATCACCGTCTATGTATTATCTGGGA-GACATTGGCCGAGAT 317
|| ||| || ||||| | || ||| | | ||||| ||| ||| || || | || ||||
Sbjct 484 TCGAAACCCTGCTGCTGATAT-ACC--CGA-GTATTTTCTTGGAGGA-ATAGACCAAGAT 538
Query 318 AACTCAGAGGATCATAT-GAAGCATCCATCCCCGCTTCAATGTTCGGT-AAGAATGAAGA 375
| ||| | |||||||| ||| | |||||| || ||||||||||| || || | |||||
Sbjct 539 CAGTCAAATGATCATATGGAA-CTTCCATCTCCTCTTCAATGTTCTGTGAA-AGTGAAGT 596
Query 376 TACCAGGATCTGATCCAACCTTAATGAACATGCTAGACTGCCAGATCCTAT-CTCTAGGC 434
| ||| |||||||||| ||| |||||||||| |||| ||||||| | | || |||||
Sbjct 597 TCCCACAATCTGATCCATTCTTGGTGAACATGCTTGACTACCAGATCAT-TCCTTTAGGC 655
Query 435 CATCAGTACAAAATGATCAGTTGGGATCCTCACTCATTGGCAACCA-GGTTCA-G-AGGC 491
||| |||| ||||||| ||||||||||| | |||||||||| | |||| | | ||||
Sbjct 656 TTTCAATACATAATGATCGGTTGGGATCCTGAATCATTGGCAA--ATGGTT-ACGTAGGC 712
Query 492 GTGGCTGTTCTTCCGCTAAACAaggagggaggaggaggaggaTTTGTTGTGCTT-ATCGG 550
|| ||| |||||||| |||| ||| | |||||| || || ||| ||||||||| || |
Sbjct 713 GTTGCTTTTCTTCCGGTAAAGAAGAACGGAGGA-GACGA--ATTCGTTGTGCTTCTTC-G 768
Query 551 CTATTC-TCATGATTTGTTGGTGTTAAAAAGTGCTGAAAGGAGATGGATG--CGTCTTGA 607
||| | | || ||||||||||||| | |||| |||||| ||| |||||| ||| |
Sbjct 769 CTA-CCGTAATCATTTGTTGGTGTTGAGAAGTTCTGAAATGAGGTGGATGAAGGTC--AA 825
Query 608 GAAAACCTCAATAGCTACTTGCTCGGGTATAGTCACTTTTAGAGGCAGATTTTATG-CAT 666
||||||||| || ||| | ||| |||| |||||| ||||||||| |||||||||| |
Sbjct 826 GAAAACCTCCATTGCTTCATGCAAGGGTTTAGTCAGTTTTAGAGGTAGATTTTATGTAAC 885
Query 667 TCTTTCTCAACGGGGACATTTTCGTTATCGATCCTTATTCGCTGGAAGC-GACTC-CCTT 724
| ||||| ||||||||||||| |||| |||||||||||||| ||||| | ||||| || |
Sbjct 886 T-TTTCTTAACGGGGACATTTACGTTTTCGATCCTTATTCGTTGGAA-CAGACTCTCC-T 942
Query 725 GATGCCCT-TGCAGCCTCTAAGCTCAATAAATTATCTG-GTCCAATCTGGCAATGATGAA 782
|||||||| | ||||||| |||| | || |||||| ||||| ||||| ||||||
Sbjct 943 GATGCCCTCAG-AGCCTCTGCGCTCGAGCAAGTATCTGATTCCAA-ATGGCAGTGATGAG 1000
Query 783 CTTTTTCTTG-T-AG-AG-GCAACCC--TCCCAGATGCTGAAGTAATAGAATTT-AGCCG 835
||||| || | | || || |||||| | || || ||||| || || | |||| || ||
Sbjct 1001 CTTTTCCTGGTTGAGAAGTTCAACCCATTTCCTGAAGCTGATGT-ATTGGATTTGAGTCG 1059
Query 836 GTTAACATGCAGAGTGAGTAGGCTAGATGAGGAGGCTGGTGTATGGGTTGTGGTAAGCGA 895
||| |||| |||||||||||||||||||||||||||||| |||||||| ||| | |||
Sbjct 1060 GTTCGCATGTAGAGTGAGTAGGCTAGATGAGGAGGCTGGTCAATGGGTTGAGGTGATCGA 1119
Query 896 TTTAGGAGACCGTGTATTTTTTATTGGAGAGCAG-GGAAATATC-GCTTGCTCGGCTAAG 953
||| ||||||||||| || ||||||||| | | |||||| || ||| |||| ||||||
Sbjct 1120 TTTGGGAGACCGTGTGTTGTTTATTGGACA-CTTTGGAAATGTCTGCT-GCTCAGCTAAG 1177
Query 954 GAGCTTCCCGATGGTTGTGGTGTGAGTGGGAACTCCATTTTGTTTACTAATTG-GCCAGG 1012
|||||||| |||||||||||||||||||||||||| |||||||| || ||| | ||||||
Sbjct 1178 GAGCTTCCTGATGGTTGTGGTGTGAGTGGGAACTCAATTTTGTTCACCAAT-GAGCCAGG 1236
Query 1013 -TGATGTAA--TTTACTTCTGTAAATATGGTGTGCCTACAGGATACGT-GGAAGACGACC 1068
| |||||| ||| | || |||||| || || | ||||||| | | ||||||||| |
Sbjct 1237 CT-ATGTAACGTTTGC--CTATAAATACGGAGTACATACAGGA-AGGGCGGAAGACGAAC 1292
Query 1069 TCAACT-TTTGGCGATTCTCAAGAGAG-TATCGTGTGATGATTCGT-AACAAATCTCCTC 1125
| || | ||||| ||||||||||||| || || || ||||| ||| |||| || ||||
Sbjct 1293 TTAA-TATTTGGAGATTCTCAAGAGAAATA-CGAGTAATGAT-CGTCAACACATTTCCT- 1348
Query 1126 CCGTGGTGGCTTTTCGGGTTGAG 1148
|| |||||| ||||| |||||
Sbjct 1349 --GTTGTGGCTCTTCGGCTTGAG 1369
> AT2G24255.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174);
BEST Arabidopsis thaliana protein match is: Protein of
unknown function (DUF295) (TAIR:AT1G64840.1); Has 124 Blast
hits to 121 proteins in 7 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr2:10315515-10317353
REVERSE LENGTH=1511
Length=1511
Score = 230 bits (124), Expect = 3e-59
Identities = 399/523 (76%), Gaps = 54/523 (10%)
Strand=Plus/Plus
Query 499 TTCTTCCGCTAAACAaggagggaggaggaggaggaTTTGTTGTGCTTATCGGCTATTCTC 558
|||||| |||| ||||||||||| || |||||| ||||||||||||| || | | ||||
Sbjct 567 TTCTTCGGCTAGACAAGGAGGGAAGAAGAGGAGAATTTGTTGTGCTTCTC-G-AAGTCTC 624
Query 559 ATG--A-TTTGTTGGTGTTAAAAAGTGCTGAAAGGAGATGGATGC-GTCTTGAGAA-AAC 613
|| | |||| ||||||||| ||||||||||| ||| |||| || | |||||||| |
Sbjct 625 -TGACACTTTGCTGGTGTTAACAAGTGCTGAAATGAGGTGGAAGCAG-CTTGAGAACGTC 682
Query 614 CTCA-ATAGCTACT-TGC-TCGGGTATAGTCACTTTTAGAGGCAGATTTTATGCA-TTCT 669
| || ||| ||| | ||| | | ||||||||||||||||||||||||||||||| || |
Sbjct 683 C-CATATA-CTA-TATGCGT-TGATATAGTCACTTTTAGAGGCAGATTTTATGCACTT-T 737
Query 670 TTCTCAACGGGGACATTT--TCGTTATCGATCCTTATTCGCTGGAAGCGACTCC-CTTGA 726
|||| | || ||| | ||||||||||||||||||||||||| | ||||| || |
Sbjct 738 TTCTTT-CAGG-ACAAATCGTCGTTATCGATCCTTATTCGCTGGAGGTGACTCTTCT-GT 794
Query 727 TGCCCTTGCAGCCTCTAAG-CTCAATA-AATTA---TCT--GGT-CCAATCTGGCAATGA 778
|| ||| || |||| | | | | | ||||| ||| ||| ||| | |||||| ||
Sbjct 795 TGTCCT--CA-CCTC-AGGACCCGCGAGAATTACGGTCTCTGGTTCCA-TATGGCAAAGA 849
Query 779 TGAACTTTTTCTTGTAGAGGCAACCCTCCCAGATGCTGAAGTAATAGAATTTAGCCGGTT 838
||||||||| || || |||| || | ||||| ||| || |||||||| ||||| |||||
Sbjct 850 TGAACTTTTCCTGGTTGAGGTAATCATCCCAAATGATGTTGTAATAGACTTTAGTCGGTT 909
Query 839 AACAT-GCAGAGTGAGTAGGCTAGATGAGGAGGCTGGTGTATGGGTTGTGGTAAGCGATT 897
| | | | |||||||| ||| |||||||| |||||||| |||||||| ||| | ||||
Sbjct 910 AGC-TCGTAGAGTGAGGAGGGTAGATGAGAAGGCTGGTAAATGGGTTGAGGTCGGTGATT 968
Query 898 TAGGAGACCGTGTATTTTTTA-TTGGAGAGCAGGGAAATATCGCTTGCTCGGCTAAGGAG 956
| |||||| ||||||| || | ||||| | | | || ||||||||||||||||
Sbjct 969 TGGGAGACTGTGTATTGTT-ACTTGGA-A--A------TCTCTCTTGCTCGGCTAAGGAA 1018
Query 957 CTTCC-CGATGGTTGTGGTGTGAGTGGGAACTCCA-TTTTGTT 997
|||| || |||| |||| ||| || |||| | | |||||||
Sbjct 1019 TTTCCTCGG-GGTTTTGGTTTGACTGAGAACGC-AGTTTTGTT 1059
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57630225660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5