BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932846
Length=1632
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64840.1 | Symbols: | Protein of unknown function (DUF295) ... 617 8e-176
AT2G24645.1 | Symbols: | Transcriptional factor B3 family prot... 207 2e-52
AT2G12160.1 | Symbols: | pseudogene, hypothetical protein | ch... 172 7e-42
AT2G12170.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 110 6e-23
AT4G00260.1 | Symbols: MEE45 | Transcriptional factor B3 family... 56.5 8e-07
> AT1G64840.1 | Symbols: | Protein of unknown function (DUF295)
| chr1:24093558-24095399 FORWARD LENGTH=1637
Length=1637
Score = 617 bits (334), Expect = 8e-176
Identities = 897/1155 (78%), Gaps = 93/1155 (8%)
Strand=Plus/Plus
Query 114 ATGCCAGACTGGTCTCTTCTCCCTGAAGAGTTACTCAACCTTATCTCCTAGCATCTAGAG 173
|||||| ||||||||| ||||| |||||| ||||||||||||||||| || |||||||
Sbjct 251 ATGCCAAACTGGTCTCAGCTCCCGGAAGAGCTACTCAACCTTATCTCCAAGAATCTAGA- 309
Query 174 GATTACTGTTTTGATGTTGTCCATGCTCGCTCTGTTTGCACCTT-GTGGCGATCCTTATT 232
| ||||||||||||| || |||||||| ||| |||| | || |||||||||| |||
Sbjct 310 CA--ACTGTTTTGATGTCGTTCATGCTCGATCTATTTG-TCGTTCGTGGCGATCCGCATT 366
Query 233 TCCCTTTCCTTCTTCCCTAT-TACGCCCAAGTTACTCTCTT-CCATCGTTAACCAAGTTT 290
||||||||||||| | ||| || || ||||||||||||| ||| |||| | |||||
Sbjct 367 TCCCTTTCCTTCTAGCTTATCAAC-CCTAAGTTACTCTCTTCCCA-CGTTTGCTAAGTTC 424
Query 291 CC-TTACGAAAGCAAAGACTTGTGCACCCTCGAGAAGATCCCTTTGTTTCTCTTTAGAGT 349
|| ||| | ||||||||||||||| || ||| ||||||||| | || ||||||||||
Sbjct 425 CCATTA-GTAAGCAAAGACTTGTGTACACTCAAGAAGATCCAAATCTTCCTCTTTAGAG- 482
Query 350 C-CG-AGCTCCT-CATGCTGATGCT-TCTGAGTATTTTCTGGGAGGAATAGGCCGTGATG 405
| || | | ||| | ||||||| | | ||||||||||| |||||||||| || |||
Sbjct 483 CTCGAAAC-CCTGC-TGCTGAT-ATACCCGAGTATTTTCTTGGAGGAATAGACCAAGATC 539
Query 406 A-T--GATGATCATATAGAGCTTCCATCTCCTCTTCAATGTTCAGTGAAAGTGAAGATCC 462
| | |||||||||| || ||||||||||||||||||||||| |||||||||||| |||
Sbjct 540 AGTCAAATGATCATATGGAACTTCCATCTCCTCTTCAATGTTCTGTGAAAGTGAAGTTCC 599
Query 463 CAGATTCTGATCCTA-CCTTGATTAACATGCTTGACTGCCAAG-T-ACTCTCTCTCGGCC 519
|| | |||||||| | |||| | ||||||||||||| || || | | || || | |||
Sbjct 600 CACAATCTGATCC-ATTCTTGGTGAACATGCTTGACTACC-AGATCATTC-CTTTAGGCT 656
Query 520 ATCAGTATAGGATGATTGGTTGCAATCCTAAAT-ATT-ACAAA-GG---CGTA------G 567
||| || | ||||| ||||| ||||| ||| ||| |||| || |||| |
Sbjct 657 TTCAATACATAATGATCGGTTGGGATCCTGAATCATTGGCAAATGGTTACGTAGGCGTTG 716
Query 568 CTTTTCTTCCGCTAAACAAGTTTGGGGGAGGAGAAGAATTCGTTGTGC-TCCTCAACTAC 626
||||||||||| |||| ||| |||||||| ||||||||||||| || || ||||
Sbjct 717 CTTTTCTTCCGGTAAAGAAG---AACGGAGGAGACGAATTCGTTGTGCTTCTTC-GCTAC 772
Query 627 AC-TAAGAATTTGTTGGTGTTAAGAAGTAT-TGAAATGAGATGGATGTTGCTTGAGATAC 684
| ||| ||||||||||||| |||||| | ||||||||| |||||| | | ||| |
Sbjct 773 -CGTAATCATTTGTTGGTGTTGAGAAGT-TCTGAAATGAGGTGGATGAAGGTCAAGAAAA 830
Query 685 CCT-CATATGGTTCATGCTCGGATTTAATCACTTTTAGAGGCAGATTTTATGCAGCCTTT 743
||| ||| || ||||||| || |||| ||| ||||||||| |||||||||| | ||||
Sbjct 831 CCTCCAT-TGCTTCATGCAAGGGTTTAGTCAGTTTTAGAGGTAGATTTTATGTA-ACTTT 888
Query 744 TC-TAATC-ATGACATCTT-CGCTATCGATCCTTACTCGCTGGAAGCA-ACTCCCCTGAT 799
|| ||| | ||||| || || | |||||||||| ||| ||||| || |||| ||||||
Sbjct 889 TCTTAA-CGGGGACAT-TTACGTTTTCGATCCTTATTCGTTGGAA-CAGACTCTCCTGAT 945
Query 800 GCCCTCGGAGGCGCTTCTGGACTGTGGTTC-AGTAAATGATCTGGTTCCATCTGGCAATG 858
|||||| || || | ||| | | | || || || | ||||| ||||| ||||| ||
Sbjct 946 GCCCTCAGA-GC-C-TCT-G-C----GCTCGAGCAAGT-ATCTGATTCCAAATGGCAGTG 995
Query 859 ATGAACTTTTCCTGGTGGAGAAAATCATCCC---T-C-GTA-CTGGTGTAATATACTTAT 912
|||| ||||||||||| ||||| ||| ||| | | | | ||| |||| | | || |
Sbjct 996 ATGAGCTTTTCCTGGTTGAGAAGTTCAACCCATTTCCTGAAGCTGATGTATTGGA-TT-T 1053
Query 913 -A-TCGGTTAACAT-TAAGAGTGAGTAGGCTAGATGAGGAGGCTGGTAAATGGGTCGAGG 969
| |||||| ||| | |||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1054 GAGTCGGTTCGCATGT-AGAGTGAGTAGGCTAGATGAGGAGGCTGGTCAATGGGTTGAGG 1112
Query 970 TTAGCGAAATAGGAGACCGTTTGTTGGTCATTGGAAA-TTTAGGAAATGTCTGCTGCTCG 1028
| | ||| | ||||||||| ||||| | |||||| | ||| |||||||||||||||||
Sbjct 1113 TGATCGATTTGGGAGACCGTGTGTTGTTTATTGGACACTTT-GGAAATGTCTGCTGCTCA 1171
Query 1029 GCTAAGGAGCTTCCTGATGGTTGTGGTTTGACTGGGAACTCAATTGTGTTCACCCATGGG 1088
||||||||||||||||||||||||||| ||| ||||||||||||| |||||||| ||| |
Sbjct 1172 GCTAAGGAGCTTCCTGATGGTTGTGGTGTGAGTGGGAACTCAATTTTGTTCACCAATGAG 1231
Query 1089 C--G-CAAAGTAAC-TTACTCCTACAAATATGGTGTGCATACAGGACGTGAGGAAGATGA 1144
| | | | ||||| || |||| ||||| || || ||||||||| | | |||||| ||
Sbjct 1232 CCAGGCTATGTAACGTTTG-CCTATAAATACGGAGTACATACAGGAAGGGCGGAAGACGA 1290
Query 1145 CCTCAAT-TGTTGGAGATACTCAAGAGATAA-ATGCGTGACGATCCTCAGCACATCTCCA 1202
|| ||| | |||||||| ||||||||| || | | || | |||| ||| ||||| |||
Sbjct 1291 ACTTAATAT-TTGGAGATTCTCAAGAGA-AATACGAGTAATGATCGTCAACACATTTCCT 1348
Query 1203 GTGGTGGCTCTCCGG 1217
|| |||||||| |||
Sbjct 1349 GTTGTGGCTCTTCGG 1363
> AT2G24645.1 | Symbols: | Transcriptional factor B3 family protein
| chr2:10480532-10482795 REVERSE LENGTH=1814
Length=1814
Score = 207 bits (112), Expect = 2e-52
Identities = 138/149 (93%), Gaps = 7/149 (5%)
Strand=Plus/Plus
Query 1298 GATAGATGGACAGAGACTCACTGACGGTTGGAAAGAGTTCGCTCTCTCGCATGATC-T-- 1354
||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
Sbjct 301 GATAGATGGACAGAGACTCACTGACGGTTGGAAAGAGTTTGCTCTCTCACATGATCTTCG 360
Query 1355 --TC--TGACATTGTTGTTTTCAGACAAGAGAGAGATATGTGTTTCCACGTTACAATGTT 1410
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 AATCGGTGACATTGTTGTTTTCAGACAAGAGAGAGATATGTCTTTCCACGTTACAATGTT 420
Query 1411 GGGACCTAGTTGTTGTGAGATTCAATATG 1439
||||||||||||||||||||| |||||||
Sbjct 421 GGGACCTAGTTGTTGTGAGATCCAATATG 449
Score = 82.4 bits (44), Expect = 1e-14
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 1235 GATTTTGAGAATGGCCAAGCAACATTTCTTCAAGCCTCTTCTTCCTGGATTCTACAGTCA 1294
|||||||| |||||| || ||||||||||||||||||||||||||||| ||| ||| ||
Sbjct 136 GATTTTGAAAATGGCGAATCAACATTTCTTCAAGCCTCTTCTTCCTGGCTTCCACACCCA 195
Query 1295 CTTGA 1299
|||||
Sbjct 196 CTTGA 200
> AT2G12160.1 | Symbols: | pseudogene, hypothetical protein |
chr2:4888068-4888932 REVERSE LENGTH=865
Length=865
Score = 172 bits (93), Expect = 7e-42
Identities = 122/136 (90%), Gaps = 2/136 (1%)
Strand=Plus/Plus
Query 1462 AGGTAAATGGCATACAAAATGCAAAGAAGATGAGTTTCTTGGATAAACATGGCGTGAAAT 1521
|||| ||||||||| |||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 617 AGGTGAATGGCATAAAAAATGCAAAGAAGATGAGTTTCTTGGATAAAGATGATGTGAAAT 676
Query 1522 GGTCTACGAGTCTGAGGTTGGAAAAGGACCGTCAGAGAATGAGATTGGTTGGAGGCTGGA 1581
||||||||| ||||||||| |||||||||||| ||||||||||||| || ||||| ||||
Sbjct 677 GGTCTACGAATCTGAGGTTTGAAAAGGACCGTAAGAGAATGAGATTAGTAGGAGGTTGGA 736
Query 1582 AAGA-GTTTTGCGATG 1596
|| | ||||||| |||
Sbjct 737 AA-ACGTTTTGCAATG 751
Score = 119 bits (64), Expect = 1e-25
Identities = 76/82 (93%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 1357 TGACATTGTTGTTTTCAGACAAGAGAGAGATATGTGTTTCCACGTTACAATGTTGGGACC 1416
||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||| ||
Sbjct 12 TGACATTGTTGTTTTCAGACAAGAGAGAGATCTGTCCTTCCACGTTACACTGTTGGGGCC 71
Query 1417 TAGTTGTTGTGAGATTCAATAT 1438
|||||| |||||||||||||||
Sbjct 72 TAGTTGGTGTGAGATTCAATAT 93
> AT2G12170.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Transcriptional factor B3 family protein (TAIR:AT2G24645.1);
Has 18 Blast hits to 18 proteins in 1 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:4890080-4891424
REVERSE LENGTH=707
Length=707
Score = 110 bits (59), Expect = 6e-23
Identities = 75/83 (90%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 1217 GAAGGTGAAAGATTTAGGGATTTTGAGAATGGCCAAGCAACATTTCTTCAAGCCTCTTCT 1276
|||| ||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 389 GAAGCTGAAAGATTTATGGATTTTGATAATGGCGAAGCAACATTTCTTCAAGCCTCTTCT 448
Query 1277 TCCTGGATTCTACAGTCACTTGA 1299
||| |||||| || |||| ||||
Sbjct 449 TCCCGGATTCCACTGTCATTTGA 471
Score = 86.1 bits (46), Expect = 1e-15
Identities = 52/55 (95%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 1298 GATAGATGGACAGAGACTCACTGACGGTTGGAAAGAGTTCGCTCTCTCGCATGAT 1352
|||||||||||||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 572 GATAGATGGACAGAGACTCACTGACGGTTGTAAAGAGTTTGCTCTCTCACATGAT 626
> AT4G00260.1 | Symbols: MEE45 | Transcriptional factor B3 family
protein | chr4:114971-117051 FORWARD LENGTH=1587
Length=1587
Score = 56.5 bits (30), Expect = 8e-07
Identities = 32/33 (97%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 1254 CAACATTTCTTCAAGCCTCTTCTTCCTGGATTC 1286
||||||||||||||||||||||||||||| |||
Sbjct 10 CAACATTTCTTCAAGCCTCTTCTTCCTGGCTTC 42
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80622075270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5