BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932847
Length=1263
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64840.1 | Symbols: | Protein of unknown function (DUF295) ... 621 5e-177
AT2G24250.1 | Symbols: | Protein of unknown function (DUF295) ... 309 4e-83
> AT1G64840.1 | Symbols: | Protein of unknown function (DUF295)
| chr1:24093558-24095399 FORWARD LENGTH=1637
Length=1637
Score = 621 bits (336), Expect = 5e-177
Identities = 921/1192 (77%), Gaps = 85/1192 (7%)
Strand=Plus/Plus
Query 110 CAAGACTGGTCTCAGCTCCCTGAAGAGCTACTAC-ACATTATCTACGAGAATCTGGA-AG 167
||| |||||||||||||||| ||||||||||| | || |||||| | ||||||| || |
Sbjct 255 CAA-ACTGGTCTCAGCTCCCGGAAGAGCTACT-CAACCTTATCTCCAAGAATCTAGACA- 311
Query 168 ACTGTTTCGATGTTATCCATGCTCGGTCTGTCTGCCACCCGTGGCGATCCATC-TTTCCC 226
||||||| ||||| | |||||||| ||| | || | ||||||||||| | ||||||
Sbjct 312 ACTGTTTTGATGTCGTTCATGCTCGATCTATTTGTCGTTCGTGGCGATCC-GCATTTCCC 370
Query 227 TTTCCTTCTTGCCTAT-TA-CGTACAAGTTATTCTCTTCCCTCGTTCGCCAAGTTCCCTC 284
||||||||| || ||| | | | |||||| ||||||||| |||| || ||||||||
Sbjct 371 TTTCCTTCTAGCTTATCAACCCT--AAGTTACTCTCTTCCCACGTTTGCTAAGTTCCC-A 427
Query 285 GCA-AAAGCAAAGGTTTCTGCACCCTCGAA-AAGTTCCCTATGTTCTTTTTTAGAGTC-C 341
| |||||||| || || || ||| || ||| ||| || ||| | ||||||| | |
Sbjct 428 TTAGTAAGCAAAGACTTGTGTACACTC-AAGAAGATCCAAATCTTCCTCTTTAGAG-CTC 485
Query 342 GTGCTCCTGCTGTTGCTGATGGGTTGCCTTCTGAGTTTTTTGTGGGAGGAATAAACCGAG 401
| || ||| ||||||| | || | |||| |||| | ||||||||| ||| ||
Sbjct 486 G-AAACC--CTGCTGCTGAT---ATACC--C-GAGTATTTTCTTGGAGGAATAGACCAAG 536
Query 402 ATAAGCCAGAGGATCATATGCAACTTCCATCATCC-CTTCAGTGTTCTGT-AAAGGTTAA 459
|| || || | ||||||||| |||||||||| ||| ||||| |||||||| ||| || ||
Sbjct 537 ATCAGTCAAATGATCATATGGAACTTCCATC-TCCTCTTCAATGTTCTGTGAAA-GTGAA 594
Query 460 GATCCCAGGATCTGATCCGA-CCCTGATGAACATTCTCGA-TACTCAGATTC-TCCCTCT 516
| ||||| ||||||||| | | || ||||||| || || ||| |||| || | ||| |
Sbjct 595 GTTCCCACAATCTGATCC-ATTCTTGGTGAACATGCTTGACTAC-CAGA-TCATTCCTTT 651
Query 517 AGGCTATCAGTACAAAATTATCGGTTGGGATCCCGACTCATTGGCAACA-AGTTTCAG-A 574
||||| ||| |||| ||| |||||||||||||| || |||||||||| | ||| | | |
Sbjct 652 AGGCTTTCAATACATAATGATCGGTTGGGATCCTGAATCATTGGCAA-ATGGTTAC-GTA 709
Query 575 GGTGTAGCTTTTCTTCCACTAAACAAGGACGGAGGAAAAGAATTTGTTGTGCTT-ATCGG 633
|| || ||||||||||| |||| ||| |||||||| | ||||| ||||||||| || |
Sbjct 710 GGCGTTGCTTTTCTTCCGGTAAAGAAGAACGGAGGAGACGAATTCGTTGTGCTTCTTC-G 768
Query 634 CTACTC-TCATGATTTGTTGGTGTTAAGAAGTGT-TGAAATGAGGTGGATG-CGGCTTGA 690
|||| | | || ||||||||||||| |||||| | |||||||||||||||| || | |
Sbjct 769 CTAC-CGTAATCATTTGTTGGTGTTGAGAAGT-TCTGAAATGAGGTGGATGAAGG-TCAA 825
Query 691 GAAAACCTCAAGAGC-TGACTGCAAGCATATAGTCACTTTTAAAGGCAAATTTTATG-CA 748
||||||||| | || | | |||||| | |||||| ||||| ||| | |||||||| |
Sbjct 826 GAAAACCTCCATTGCTTCA-TGCAAGGGTTTAGTCAGTTTTAGAGGTAGATTTTATGTAA 884
Query 749 GTCTTTATTAACGGGGATGTTTTTGTTATCGATCCTTATTCGCTGGAAGCA-ACTCCCCT 807
| ||| |||||||||| ||| ||| |||||||||||||| ||||| || |||| |||
Sbjct 885 CT-TTTCTTAACGGGGACATTTACGTTTTCGATCCTTATTCGTTGGAA-CAGACTCTCCT 942
Query 808 GATGCCCTCGGAGCGTCTGAC-CTCACAG-AACTATCTTG-TTCCTTCTGGCAATGATGA 864
||||||||| |||| |||| | ||| || || |||| || |||| ||||| ||||||
Sbjct 943 GATGCCCTCAGAGCCTCTG-CGCTC-GAGCAAGTATC-TGATTCCAAATGGCAGTGATGA 999
Query 865 ACTGTTCCTGGTTGAG-AGAATC-A-TC-GTTCGTGGTAG-TG-T-AATACAATTT-TG- 915
|| |||||||||||| || || | | ||| | | || || | || |||| |
Sbjct 1000 GCTTTTCCTGGTTGAGAAG-TTCAACCCATTTCCT-GAAGCTGATGTATTGGATTTGAGT 1057
Query 916 CAAGTTAGCATGTAGAGTGAGTAGGCTAGATGAGGAGGCTGGTGAATGGATCGTGGTCAC 975
| ||| |||||||||||||||||||||||||||||||||||| ||||| | | ||| |
Sbjct 1058 C-GGTTCGCATGTAGAGTGAGTAGGCTAGATGAGGAGGCTGGTCAATGGGTTGAGGTGAT 1116
Query 976 CGATTTGGGAGATCGTGTATTGTTAATTGGACAACCG-GGAAATAG-CT-CATGCTCAGC 1032
|||||||||||| ||||| ||||| |||||||| | |||||| | || | ||||||||
Sbjct 1117 CGATTTGGGAGACCGTGTGTTGTTTATTGGACA-CTTTGGAAAT-GTCTGC-TGCTCAGC 1173
Query 1033 TAAGGAGCTTCCTGATGGTTGCGGTGTGAGTGGGAACTCAATGTTGTTCACCAATGAAAT 1092
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1174 TAAGGAGCTTCCTGATGGTTGTGGTGTGAGTGGGAACTCAATTTTGTTCACCAATGAGCC 1233
Query 1093 ATTCAATGAAAC-TTACTCCTATAAATATGGAGTAAATACAGGAAACTCAGAAGACGACC 1151
| | ||| ||| || |||||||||| |||||| ||||||||| | |||||||| |
Sbjct 1234 AGGCTATGTAACGTTTG-CCTATAAATACGGAGTACATACAGGAAGGGCGGAAGACGAAC 1292
Query 1152 TCAGTTTTTGGAGATCCTCAAGAGAGACTA-GTGTGACGATCCTCAACACATCTCCAATG 1210
| | | ||||||||| ||||||||| | || | || | |||| ||||||||| ||| |
Sbjct 1293 TTAATATTTGGAGATTCTCAAGAGAAA-TACGAGTAATGATCGTCAACACATTTCCTGTT 1351
Query 1211 GTGGCTCTCCGATTTGCGCGGGAAAAGCCGTAAAATCTTACTTTGGATACCT 1262
|||||||| || ||| | || || || | ||||||| ||||||||||||
Sbjct 1352 GTGGCTCTTCGGCTTGAGAGGCAA--GCTG-AAAATCTCGCTTTGGATACCT 1400
> AT2G24250.1 | Symbols: | Protein of unknown function (DUF295)
| chr2:10313286-10314910 REVERSE LENGTH=1335
Length=1335
Score = 309 bits (167), Expect = 4e-83
Identities = 832/1132 (73%), Gaps = 130/1132 (11%)
Strand=Plus/Plus
Query 112 AGACTGGTCTCAGCTCCCTGAAGAGCTACTACACATTATCTACGA-GAATCTGGAAGA-C 169
|||||||||||||||||||||||||||||| |||||||||| | | | |||| || || |
Sbjct 102 AGACTGGTCTCAGCTCCCTGAAGAGCTACTTCACATTATCT-CAACGCATCTAGAGGATC 160
Query 170 --TGTTTCGATGTTATCCATGCTCGGTCTGTCTGCCACCCGTGGCGATCCATC-TTTCCC 226
| |||||||| | | ||||| || ||||| |||| | | |||||||||| | |||||
Sbjct 161 ACTATTTCGATGCTGTTCATGCCCGCTCTGTTTGCCGCTCATGGCGATCCA-CATTTCCA 219
Query 227 TTTCCTTCTTGC-CTATTACGTACAA-GTTATTCTCTTCCCTCGTTCGCCAAGTTCCCTC 284
|||||||||| | |||||||| ||| |||| ||||||||| | ||| || || |
Sbjct 220 TTTCCTTCTT-CTCTATTACGC-CAAAGTTACTCTCTTCCCGCTTTC-CC---TT---TA 270
Query 285 GCAAAAGCAAAGG-TT-T-CTGCACCCTCGAAAAGTTCCCTATGTTCTTTTTTAGAGTCC 341
| ||| |||||| || | ||||||||| || ||| ||||| ||||| | |||||||| |
Sbjct 271 G-AAA-GCAAAGACTTGTGCTGCACCCTGGAGAAGGTCCCTTTGTTCCTCTTTAGAGTTC 328
Query 342 GTG-CTCCTGCTG-T--TGCTGATGGGTTGCCTTCTGAGTTTTTTGTGGGAGGAATAAAC 397
| ||||| ||| | |||||||| || ||| | || | |||| |||||||| || |
Sbjct 329 -TAACTCCTCCTGATGCTGCTGATGC-TT-CCTCC-GAATATTTTCTGGGAGGATTAGGC 384
Query 398 CGAGATAAGCCAGAGGATCATATGCAACTTCCATCATCC-CTTCAGTGTTCTGT-AAAGG 455
| ||||||| || | |||||| || | |||||||| ||| |||||||| || || ||||
Sbjct 385 CAAGATAAGTCAAATGATCATGTGGAGCTTCCATC-TCCTCTTCAGTGCTCAGTGAAAG- 442
Query 456 TTAA-GATCCCAGGATCTGATCCGACCCTGATGAACATTCTCGA-TACTCAGATTC-TCC 512
| || | ||| |||| |||| || | |||||||||| || || | | ||||| | |||
Sbjct 443 TCAATGTTCC-AGGAACTGAGCCAATTTTGATGAACATGCTTGACTGC-CAGAT-CATCC 499
Query 513 CTCTAGGCTATCAGTACAAAATT-ATCGGTTGGGATCCCGACTCATTGGCAACAAGTTTC 571
|||| ||| || |||||| | || || | | || | | | || | | || || | |
Sbjct 500 CTCTGGGCCATAAGTACAGA-TTGAT-GATCGGT-TGCA-A-TCCT-G--AAGAA-TA-C 549
Query 572 AGAGGTGTAGCTTTTCTTCCACTAAAC-AA---GGACGGAGGAAAAGAATTTGTTGTGCT 627
|| || |||||||||||| |||||| || ||| |||||| ||||| |||| |||
Sbjct 550 AG---TGCAGCTTTTCTTCCGCTAAACGAACAAGGA-GGAGGAGGCGAATTCGTTGCGCT 605
Query 628 TATCGGCTACTCTCAT--GATTTGTTGGTGTTAAGAAGTGTTGAAATGAGGTGGATGCGG 685
||| || | || || | ||| ||||||||||||||| ||||||||| ||||| |||
Sbjct 606 CCTCGACTGCACTGATTTG-TTT-TTGGTGTTAAGAAGTACTGAAATGAGATGGATTCGG 663
Query 686 CTTGAGAAAACCTCAAGAGCTG-ACTGCAAGCA-TATAGTCACTTTTAAAGGCAAATTT- 742
||||||||| |||||| ||| | || ||| | | || ||||||||| ||| || ||
Sbjct 664 CTTGAGAAACCCTCAACTGCTTCA-TGTAAGGAGT-TATTCACTTTTAGAGG-AAGGTTC 720
Query 743 TATGCAGTCTTTATT-AACGGGGATGTTTTTGTTATCGATCCTTATTCGCTGGAAGCAAC 801
|||||| |||| || || ||||| || ||||||||||||| |||||||||||| ||
Sbjct 721 TATGCAA-CTTTCTTTAATGGGGACACGTTCGTTATCGATCCTTCTTCGCTGGAAGCGAC 779
Query 802 TCCCCTGATGCCCTCGGAGCGTCTGACCTCACAGAACTATCTTGTTCCTTCTGGCAATGA 861
|||||| | || || | || ||| || || | || ||| ||||| |||||||||||
Sbjct 780 TCCCCTAACACC-TCATA---TC-GAC-TC-CA-A-CTTTCTGGTTCCATCTGGCAATGA 830
Query 862 TGAACTGTTCCTGGTTGAGAGAATCATCGTTCGTG-GTAGTGTAATACAATTTTGCAAGT 920
|| || ||||||||| ||| | | | ||| | | | |||| | | ||||
Sbjct 831 GGAGCTTTTCCTGGTTAAGACAG--A-C-TTCCTAAG-A-TGTAG-AG--T-----AAGT 876
Query 921 TAG-CATGTAGAGTGAGTAGGCTAGATGAGGAGGCTGGTGAATGGATCGTGGTCACCGAT 979
|| | | ||| |||| ||||| | ||| | | ||| || | | | ||| ||||
Sbjct 877 -AGGC-T--AGA-TGAGGAGGCT-GCTGA--ATG--GGT---TG-A--G-G-TCAGCGAT 918
Query 980 TTGGGAGATCGTGTATTGTTAATTGG---ACAACC-GGGAAATAGCT-CATGCTCAGCTA 1034
|||||||| ||||| ||||| |||| ||| || ||| ||| || | ||||| ||||
Sbjct 919 TTGGGAGACCGTGTTTTGTTTCTTGGTGGACA-CCTGGGGAATTTCTAC-TGCTCCGCTA 976
Query 1035 AGGAGCTTCCTGATGGTTGCGGTGTGAGTGGGAACTCAATGTTGTTCACCAATGAAAT-A 1093
||||||||||| ||||||| ||| ||| |||| |||| || ||||||||| || | |
Sbjct 977 AGGAGCTTCCTCATGGTTGTGGTTTGACTGGGGACTCGATTTTGTTCACCGTTGGG-TCA 1035
Query 1094 TTCAATGAAACTTACTCCTATAAATATGGAGTAAATACAG------GAAACTCAGAAGAC 1147
||||| ||||||| ||||||||||||||||| ||||| |||| | ||||||
Sbjct 1036 CGCAATGTAACTTACCCCTATAAATATGGAGTACATACAAATAAAAGAAAGGCTGAAGAC 1095
Query 1148 GACCTCAGTTTTTGGAGATCCTCAAGAGAGACTAGTGTGACGATCCTCAACA 1199
| ||| || ||||||||||||||| |||| | ||||| | ||| |||||
Sbjct 1096 AATATCAATTGTTGGAGATCCTCAAGGGAGAATCGTGTGTTGTTCCGCAACA 1147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62098074165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5