BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932848
Length=853
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24255.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 113 2e-24
> AT2G24255.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174);
BEST Arabidopsis thaliana protein match is: Protein of
unknown function (DUF295) (TAIR:AT1G64840.1); Has 124 Blast
hits to 121 proteins in 7 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr2:10315515-10317353
REVERSE LENGTH=1511
Length=1511
Score = 113 bits (61), Expect = 2e-24
Identities = 111/133 (83%), Gaps = 12/133 (9%)
Strand=Plus/Plus
Query 179 ACT-TATCTCCAAGCATCTAGAGGATTACTGTTTCGATGTTGTTCATGCTCGCTCTGTTT 237
||| ||||| ||| |||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 247 ACTGTATCTTGAAGTATCTAGGGGACAACTGTTTCGATGTTGTTCATGCTCGCTCTGTTT 306
Query 238 GCAGCTCT-TGGCGATCCTCGTTTCCCTTTCCTTCTTCTCT-GT-ACGCCCAAGTTACTC 294
|||||| | ||||||||| | ||||| ||| | || | || || |||||||||||||||
Sbjct 307 GCAGCT-TGTGGCGATCCACATTTCC-TTTG-T-CTCC-CTTGTTACGCCCAAGTTACTC 361
Query 295 TCAAGTTCCCTCG 307
|| ||||||||
Sbjct 362 TC---TTCCCTCG 371
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41593873716
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5