BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg932848 Length=853 Score E Sequences producing significant alignments: (Bits) Value AT2G24255.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 113 2e-24 > AT2G24255.1 | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G64840.1); Has 124 Blast hits to 121 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:10315515-10317353 REVERSE LENGTH=1511 Length=1511 Score = 113 bits (61), Expect = 2e-24 Identities = 111/133 (83%), Gaps = 12/133 (9%) Strand=Plus/Plus Query 179 ACT-TATCTCCAAGCATCTAGAGGATTACTGTTTCGATGTTGTTCATGCTCGCTCTGTTT 237 ||| ||||| ||| |||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 247 ACTGTATCTTGAAGTATCTAGGGGACAACTGTTTCGATGTTGTTCATGCTCGCTCTGTTT 306 Query 238 GCAGCTCT-TGGCGATCCTCGTTTCCCTTTCCTTCTTCTCT-GT-ACGCCCAAGTTACTC 294 |||||| | ||||||||| | ||||| ||| | || | || || ||||||||||||||| Sbjct 307 GCAGCT-TGTGGCGATCCACATTTCC-TTTG-T-CTCC-CTTGTTACGCCCAAGTTACTC 361 Query 295 TCAAGTTCCCTCG 307 || |||||||| Sbjct 362 TC---TTCCCTCG 371 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41593873716 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5